| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2558 |
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| Symbol | |
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| ID | 3725261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 3002028 |
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| End bp | 3005213 |
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| Gene Length | 3186 bp |
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| Protein Length | 1061 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637752169 |
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| Product | signal transduction protein |
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| Protein accession | YP_357966 |
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| Protein GI | 77920151 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000000139112 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAATG TCTTTCTTGC CCTGATTCAA AACGCCGCCC TGCTGCTCGC CATGGCATTC
ATCTACGATA TGATGACCAG CCGCTATCGC CTCAAGCACC GGCTGATCGT ACAGATCTGC
GTTGGCATAT CCCTCGGCCT GCTCAGTATC ATCCTCATGC TCTCTCCCTG GCAGTACATC
CCAGGCATTG TTTTCGATAC CCGCTCGGTG CTGTTGGGGA TATCGGGGCT GTTTTTCGGG
GCTGTCGCCA CCAGCGTGGC CATGCTCATG GCCGCCGCCT TTCGCCTCTT CCAGGGCGGG
GCCGCCGCCT GGATCGGGGT GGGCGTCATC TTTGCCTCGG GGATCGTGGG CATCTACTGG
AAATACCGAA ACCGAAAATC GGCCGAACAA CTCACCTGGT GGCAGCTCTA CGGTTTCGGC
GTGCTCGTGC ATCTCATCAT GCTGGCCTTC ATGTTGCTGC TGCCCTGGCA GACCGCGTTT
CGCGTTTTGC ATCATATCTC CCTGCCTGTC CTTCTTATCT ACCCTCTGGC TACCGCCATG
CTCGGTTCCC TGATGCTCAA ACGTCAACGC CGAGACCAGA TATCCAAAGC CCTGCAGACC
AGCGAGGAAC GGCTGCGGAT GGCCCTCAAG GCGTCCAAGC AGGGCCTCTA CGATCTCAAC
GTGCAATCCG GCAATATGAT CGTCAATGCC GAATATGCCC TGATCCTCGG CTACGATCCC
CAGAACTTTC GCGAGACCAA CGGGGACTGG ATAGCACGCA TGCACCCCGA GGACCGGTCG
GCGGTACTGG CGGTTTACCG CAATTATCTT GCCGGCAAAA CAGAGGAATT CCGTGCCGAA
TTCCGCCAGC GGACGCGCTG CGGGCAATGG AAATGGGTGC TGTCCATGGG CAAGATCGTC
GAGCGGGATA CCCACGGGCA GCCGTTGCGC ATGCTCGGAA CCTTTTCCGA TATCACCGAA
CGCCGCCAGT CCGAGGAACA GACCCGCAAA GCGGAAAGGG AAAAAGCCGA CCTGCTCGAA
GAAGCCCAGC AGGCTCGCCT GACTTTGCAA CGTCTGTTCG AAGAACAAAC CCTGGCCTCG
GCGGAAATCG AGCGTACGTC ACGTCTACTG GCAGAGGTTC TCAACGCGGC GTCCGAAGTA
TCCATTATTG CCACCGATCC GCGAGGAATC ATTACCGTCT TCAATCGCGG GGCGGAAAAG
ATGCTGGGCT ACTCAGCCGA AGAAATGGTC GGCAGAGAAA CGCCCACGGT ATTTCACCTG
GCATCGGAAC TGCAAACCCG CTATACGGAA CTCGGCGCCG ACCGCGGCAC GCCTATCAAG
GATTTTGCCG ACTACATGGC CCACGCCACC ACCGCTGACG CCGAACATCG CGAATGGACA
TATACAAGCA AACAGGGCGA ACACATTTCG GTGTCTCTGG TCATTACCGC CATGCGCTCC
CCCGCTCATG GAATTGTCGG CTACCTCGGC ATCGCCCAGG ACATCACGGA ACGCAAGCGC
CAGGAAAATA CTTTGCGCAA ACTCTCCCAG GTGGTGGAGC AAAGTCCGAC GGCCGTCATA
CTGACCGACC CGCAGGGGAA CATCGAATAT GCCAACCCCA AATTCACCCA GATCACCGGC
TATTCCCTGA CGGAGGTCCA TGGCAAAAAC CCCCGCCTGC TCAAATCCGG TGAAACATCC
GCCGAGGAAT ACCGCGATCT ATGGACGACC ATCACAGCGG GCAGGGAGTG GCATGGCGAA
TTTCATAACA AACGTAAAGA CGGATCTCTT TTCTGGGAGC ATGCCTCCAT CTCCCCGGTG
CGCAACGACG CGGGCGACAT CAGCCATTTC CTGGCCATCA AAGAAGACAT CACCGACCGC
AAACGCTACG AGGAGCAACT GCAGCACCTG GCCACCCACG ACAACCTGAC CGGCCTGGCC
AACAGAGCCT TGCTGCAGGA TAGACTTGAG CAATCGATCC TGTTCGCCAA ACGCTCGGGG
CGATTGGTAG CCGCCCTGCT GCTCGATCTC GACCGCTTCA AAATCATCAA CGACAGCCTT
GGTCACAGTT TTGGCGACAG GCTGCTGCAG ATTGCGGCGG ACCGGTTGCG GGAATCCGTG
CGTGGAGCCG ATACCGTTGC GCGTCTGGGC GGGGACGAAT TCGTTATTCT GCTGGCCGAG
GTGGCCAATG AAGAGGACGT GGGCAAGGTG GCAAAAAAAA TCCTCGACAG AATTACGGCA
CCGTTTCAGA TTGCCGATCG CGAGATCACT GTCACGGCAA GTTTGGGCAT CAGCATCTAC
CCGCAGGATG GCGAAGACGA GGAAACCCTG ATCCGCAATG CCGATATCGC CATGTACCAG
GCCAAGGAGG AAGGAAACGC CTTCCGCCTC TACGCGCCGG AGATGAATAT CGTTGTTCAT
GAAGCCATGG AGATGGAAAC GGACCTGCGC CGGGCCCTGG ATCGTGGCGA GTTACTGTTG
CATTATCAAC CCAAGATCGA CCTGGATAGC GGTAAAATCA CCGGAGCGGA AGCTCTGGTG
CGATGGCAAC ACCCGGTACG CGGCATGATT GCGCCCGGGA TGTTCATCCC CCTGGCGGAA
GAAACCGGCC TTATCCTGCC GATCGGAGAG TGGGTTCTGG AAAACATCTG TTTACAGATA
AAAAGCTGGC AAACCCAGGG ATTCCCCCTC GTCCCCATCG CTGCGAACCT GTCGGCGCGC
CAGTTCCGTA ACGATGAGCT GATCGCCACC ATACAGCGGA TTCTGCAGGA CACCGGCCTT
CCTCCGCATC TGCTCGAACT GGAATTGACC GAGAGCATGA TCATGCGCAA CGTTCAGACC
GCGGCGGAAA CCATGCAGGA ATTAAACGCC CTCGGCGTCA GTCTGGCCCT GGATGATTTC
GGTACCGGAT ATTCATCCCT GAATTACCTG CGGCGGTTTC CCGTTGACTG TCTCAAGATC
GATCGCTCTT TTATCAGCGA TGTCGCGGAC GATCCCAGTG CAGCGGCCGT TGCCACCAGC
ATCATCGCCA TCGCCCACAG CCTGGGCCTG CAGGCCGTGG CGGAAGGTGT GGAAACCGAA
GAACAACTCG AATTTTTGCG CCAATGCGCC TGCGACAGCT ATCAGGGATA TCTTTACAGC
GCCCCCCTCG CCGTCGAGGA ATTTACGGCC ATGCTGCGCC AGGAGTCTAC GCGCACCGCC
CCCTGA
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| Protein sequence | MDNVFLALIQ NAALLLAMAF IYDMMTSRYR LKHRLIVQIC VGISLGLLSI ILMLSPWQYI
PGIVFDTRSV LLGISGLFFG AVATSVAMLM AAAFRLFQGG AAAWIGVGVI FASGIVGIYW
KYRNRKSAEQ LTWWQLYGFG VLVHLIMLAF MLLLPWQTAF RVLHHISLPV LLIYPLATAM
LGSLMLKRQR RDQISKALQT SEERLRMALK ASKQGLYDLN VQSGNMIVNA EYALILGYDP
QNFRETNGDW IARMHPEDRS AVLAVYRNYL AGKTEEFRAE FRQRTRCGQW KWVLSMGKIV
ERDTHGQPLR MLGTFSDITE RRQSEEQTRK AEREKADLLE EAQQARLTLQ RLFEEQTLAS
AEIERTSRLL AEVLNAASEV SIIATDPRGI ITVFNRGAEK MLGYSAEEMV GRETPTVFHL
ASELQTRYTE LGADRGTPIK DFADYMAHAT TADAEHREWT YTSKQGEHIS VSLVITAMRS
PAHGIVGYLG IAQDITERKR QENTLRKLSQ VVEQSPTAVI LTDPQGNIEY ANPKFTQITG
YSLTEVHGKN PRLLKSGETS AEEYRDLWTT ITAGREWHGE FHNKRKDGSL FWEHASISPV
RNDAGDISHF LAIKEDITDR KRYEEQLQHL ATHDNLTGLA NRALLQDRLE QSILFAKRSG
RLVAALLLDL DRFKIINDSL GHSFGDRLLQ IAADRLRESV RGADTVARLG GDEFVILLAE
VANEEDVGKV AKKILDRITA PFQIADREIT VTASLGISIY PQDGEDEETL IRNADIAMYQ
AKEEGNAFRL YAPEMNIVVH EAMEMETDLR RALDRGELLL HYQPKIDLDS GKITGAEALV
RWQHPVRGMI APGMFIPLAE ETGLILPIGE WVLENICLQI KSWQTQGFPL VPIAANLSAR
QFRNDELIAT IQRILQDTGL PPHLLELELT ESMIMRNVQT AAETMQELNA LGVSLALDDF
GTGYSSLNYL RRFPVDCLKI DRSFISDVAD DPSAAAVATS IIAIAHSLGL QAVAEGVETE
EQLEFLRQCA CDSYQGYLYS APLAVEEFTA MLRQESTRTA P
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