Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_2420 |
Symbol | lysA |
ID | 3725122 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | + |
Start bp | 2847352 |
End bp | 2848605 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637752031 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_357829 |
Protein GI | 77920014 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1.04804e-17 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTACT TTCAATACCG CGACAACGAC CTTTTTTGTG AAGATGTCGC CCTTAAGGAT ATCGCCGCTC AGGTCGGCAC GCCCTTCTAT GTTTATTCCC ATGCGACCCT CAGTCGCCAT CTGGAAGCAT TTTCCTCGGC CTTTGCCGAC GTGCCTCACC TGATCTGTTA TTCCATCAAG GCCAACAGCA ACCTGGCGGT GCTGAAAACC TTCGTCAGCC ACAATGCCGG CTTCGACATC GTCTCCGGTG GCGAACTGTT CCGTGCCCAG CAAGTCGGTT GCGATCCCGC CAAAATCGTC TACTCCGGCG TGGGTAAAAC CGAAGCGGAA ATCGCCGATG CGCTGCAGGC GGGCATCCTG ATGTTCAATG TCGAGTCGCG ACAGGAGCTC GATACCATCA ATGCCGTGGC CGGACGGCTC GGCAAAAAAG CCGGCATCGC CATCCGCGTC AACCCCGACG TCGATCCGCA GACCCACCCC TACATCTCCA CGGGTATGAA AAAGGCCAAG TTCGGCATCA ACATCTCCCA GGCCCTGGAC GATTACCGCC TTGCGGCCAG CCTGCCGAAC CTCGAGGTCA TTGGCGTGGA CTGCCACATC GGCAGCCAGT TGACCAAGCT GTCGCCCTTC GTCGATGCCA TCGCAAAAAT TCGCGAACTG GTGCAGACCC TGCAGAACGA AGGTTTCGGC ATCAAATACC TCGATCTGGG CGGCGGCCTC GGCATCACCT ACGAGGAAGA AGAGCCCCCC AGCCCCGCCG ATTATGCCGA AGTCATCATC GAAGGCACCA AAGGCCTGGG CGTTACCCTG GTTTTTGAAC CGGGCCGCGT CATGGTCGGC AATGCCGGCA TGCTGGTTTC CAAAGTCCTG TATGTCAAAG AAGGCGAAGC CAAAAACTTC GTGATCGTCG ATGCCGCCAT GAATGATCTC ACCCGCCCGG CGCTGTATGG CTCGTACCAG GGCATTCAGG CGGTGGATCG TTCCACTTCC GACACCATCG TCGCCGACGT GGTCGGCCCG ATCTGCGAAT CGGGAGACTT TCTCGCCCAG GATCGGGAGA TCACCGCATT TTCCCAGGGC GACTTGCTGG CGGTCGCTTC GGCTGGAGCC TACGGCTTTA CCATGAGTTC GAATTACAAC AGCCGCCGGC GGGTACCGGA GATCATGGTG AAAGGTGACC AGGTCATGGT CATCCGCAAA CGTGAAACCT ACGACGACCT GATCAAAGGC GAAAGCATCC CGGAAGGACT GTAA
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Protein sequence | MNYFQYRDND LFCEDVALKD IAAQVGTPFY VYSHATLSRH LEAFSSAFAD VPHLICYSIK ANSNLAVLKT FVSHNAGFDI VSGGELFRAQ QVGCDPAKIV YSGVGKTEAE IADALQAGIL MFNVESRQEL DTINAVAGRL GKKAGIAIRV NPDVDPQTHP YISTGMKKAK FGINISQALD DYRLAASLPN LEVIGVDCHI GSQLTKLSPF VDAIAKIREL VQTLQNEGFG IKYLDLGGGL GITYEEEEPP SPADYAEVII EGTKGLGVTL VFEPGRVMVG NAGMLVSKVL YVKEGEAKNF VIVDAAMNDL TRPALYGSYQ GIQAVDRSTS DTIVADVVGP ICESGDFLAQ DREITAFSQG DLLAVASAGA YGFTMSSNYN SRRRVPEIMV KGDQVMVIRK RETYDDLIKG ESIPEGL
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