Gene Pcar_2404 details

Gene Information

• Locus tag: Pcar_2404
• ID: 3725106
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: +
• Start bp: 2829483
• End bp: 2830061
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637752015
• Product: 2'-5' RNA ligase
• Protein accession: YP_357813
• Protein GI: 77919998
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1514] 2'-5' RNA ligase
• TIGRFAM ID: [TIGR02258] 2'-5' RNA ligase

Plasmid Coverage information

• Num covering plasmid clones: 56
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAACGG TTCGCGCCTT TATCGCAGCC CCCCTTGACG GGCCCGTTTT CGAGAAAATA 
GTGCGACTGC AGCAGGAGTT GTCCGCCGCC CTGCCATCCG TACGCTGGGT GCGGCCGGAA 
ACCATGCATC TCACCCTGGC GTTCCTGGGC GATATCTCCG AAGAATCGCT TGAAAAAATC 
GGCGGGTCTA TGCTATCGAT AGGAAGTGTT TTCGCACCCG TGACCGTAGA TGTCGGCGGG 
CTTGGCGCCT TTCCGTCTCT GAAACGACCG AGGGTCGTAT GGCTGGGGCT GCAAAACGCA 
AATACACTAT GCGACCTGCA GATGACGATC ACAGATATGT TGCGCCAGCT GCAGGTGTCC 
TGGGATGACA AACCCTTCAA ACCCCACTTG ACCCTTGGAC GCTGCCGGCA ACCCGTTCCG 
GCCATCGACC AGCGGCTGGC ACCGTTTATG GAAAGACAGT GCGGCCATCT GCGGATTTCT 
CGTCTGGTAC TGTACGAAAG CCAGCTAACG GCGCGCGGCG CCATACATCT GCCGCGCTAC 
GAAACACCGC TGACCGGTCC ATCCGGCGGC CGCCACTAA 

 

Protein sequence

MKTVRAFIAA PLDGPVFEKI VRLQQELSAA LPSVRWVRPE TMHLTLAFLG DISEESLEKI 
GGSMLSIGSV FAPVTVDVGG LGAFPSLKRP RVVWLGLQNA NTLCDLQMTI TDMLRQLQVS 
WDDKPFKPHL TLGRCRQPVP AIDQRLAPFM ERQCGHLRIS RLVLYESQLT ARGAIHLPRY 
ETPLTGPSGG RH