Gene Pcar_2368 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_2368 
SymbolispG 
ID3725070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand- 
Start bp2788834 
End bp2789904 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content61% 
IMG OID637751979 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_357777 
Protein GI77919962 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0000000000502682 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGACGCG TTTCCCGACG GATTCAACTC GGCAATGTCG CTATTGGCGG CGATGCGCCC 
GTATCCGTGC AATCGATGTG CAGTACCTCG ACCAGCGATG TGACGGCAAC CCTGGAGCAG 
ATCCGACGTC TCGCCGAAGC CGGTTGCGAA ATCGTGCGCT GTGCGGTGCC TGATGAACAA 
GCCGCCCAGG CATTGTCCGC TATTCGCGCC GAATGTCCCA TACCGCTGGT GGCCGATATT 
CATTTCGATT ATCGTCTGGC CCTGACCGCT TTGCAAAGCG GCGTTGACGG CCTGCGGCTC 
AATCCCGGCA ATATCGGAGA GCGTTGGAAG GTCGAAGAGG TGGTCAAAGC CTGTGCCGAA 
CGTCATGTGC CTATTCGTAT CGGTGTGAAT GCCGGTTCCC TCGAAAAGGA GTTGCTGGAG 
CGCCACGGGC ATCCCACCGC CGCGGCCATG GTCGAGAGCG CCCTTGGGCA TATCCGTATC 
CTTGAAGATC TGGGCTATCA GGATATCAAG GTGAGTCTCA AAGCTTCGGA TATCCGCCGC 
ACGGTCGAAG CTTATCGACT GCTTGCCGCT CAGGTCGATT ATCCCCTGCA TATCGGTATT 
ACCGAAGCGG GCACGACCTG GGCAGGCACT ATCAAGAGCG CCGTGGGGCT GGGGGCGCTG 
CTGTACGATG GTATCGGCGA CACCCTGCGC GTTTCCCTGA CCGGCGACCC GGTGGAAGAG 
GTGCGGGTCG GTTGGGAAAT ACTCAAGTCT CTGGAGTTGC GCGAGCGTGG TCCCGTGTTC 
GTCAGCTGCC CCACCTGCGG ACGTTGTCAG ATCGATCTGA TTTCCGTGGC GGAAGAGGTT 
GAAAAACGCC TGCACGATTT GCCCCTGACC ATCACCGTTG CGGTGATGGG GTGCGTGGTA 
AACGGCCCCG GGGAAGCCCG CGAAGCCGAT CTCGGCATCG CCGGTGGCAA GGGCCAGGGG 
ATACTTTTCC GGCATGGCGA GGTGGTGCGT AAAGTGCCTC AGGAAGAACT GGCCGATGCC 
CTGGTCGAGG AAGCCTGGAA ACTGGTGGAG GAGGCGTCTT CCGGCCGCTG A
 
Protein sequence
MRRVSRRIQL GNVAIGGDAP VSVQSMCSTS TSDVTATLEQ IRRLAEAGCE IVRCAVPDEQ 
AAQALSAIRA ECPIPLVADI HFDYRLALTA LQSGVDGLRL NPGNIGERWK VEEVVKACAE 
RHVPIRIGVN AGSLEKELLE RHGHPTAAAM VESALGHIRI LEDLGYQDIK VSLKASDIRR 
TVEAYRLLAA QVDYPLHIGI TEAGTTWAGT IKSAVGLGAL LYDGIGDTLR VSLTGDPVEE 
VRVGWEILKS LELRERGPVF VSCPTCGRCQ IDLISVAEEV EKRLHDLPLT ITVAVMGCVV 
NGPGEAREAD LGIAGGKGQG ILFRHGEVVR KVPQEELADA LVEEAWKLVE EASSGR