| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2314 |
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| Symbol | |
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| ID | 3725006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 2703145 |
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| End bp | 2705769 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637751915 |
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| Product | sensory box/GGDEF family protein |
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| Protein accession | YP_357723 |
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| Protein GI | 77919908 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000000124214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGTGGT CTTGGAAACG ATTTTTAGGT ATGGGGCTGG TGATTCTTTT TTTGAATGGC
ACCCTGCTGA TGCTTAATCG TGGTGTCTTT CTCAAAAGCT TTACGCGTTT GGAAAATGAT
CGTGCCTATG AAACCCTGCA TCGTGTGGTT GGCGTTTATC AGGAAAACCT GGCATTTCTT
GAACGCATGA CCAAGGATTG GGCCAACTGG GATGATGCTT ATGCGTTTAT GCAGACCCGC
GATCCATCAT TTATAACAAG CAATGTGGTG GACAGCACTT TTTCAACGCT GAACGTCAAT
GTCATTCTTT TTCTGGATGA ACAAGGGCTG CCGGTTGCCG GCAAGGCTTA TGACTTAATC
AGGCATGGGG CTGTCCCCAT GTATGTGGGG CTGCAAGATC ATTTTACCAC GGAGAGTTTC
GCAACCCTTG TCGAACATCA ACGACGGGGA GTAACGGGTT TGCTGCGTTT GCCTCAGGGA
CTTCTGATGC TGTCCTGGCA GCCGATACTG ACCGGCGAAG GCCAGGGGCC ATCGCGGGGA
GCGTTGCTCA TGGGGCGTTT ACTGGATAGC AGGGAATTGG ACAGGCTCGG TGCCAAGGCA
GAACAGTCTC TGGAGTTCGG CCGGCTTCAT TCCGGTCCAT CGTGGCCTTC CTGGTCGGAG
CAAAGCACCG CCGCCCCTGA GATCCTATTG CGGGTTGTCG ATGCAACACG CATACGAGCA
CGGGTATTGT TCCGGGATAT ATTCGGCGTA CCCGCGGCCG TGATTGGCAC CAATCTTTCC
AGGGATATCT ATGCGCAGGG GCTGCAATCC ATTATTTACT TTCATATCTG GTTGCTCGTG
GTCAGTCTTA TGGCTGGAGT CTGTATCCTG GTTATCTGGG ACAGACTGGC AGGGTCCCGG
CAGAGACAGC GCGATAGCGA ACATCTCTTT CAGCATTTGT TTCAATTCTC GGCCGATGCC
TTTTTCCTAT GTGAAGAGCA GGGCCGGTTT GTCGATGTCA ATCACCAGTC CTGTGCAGTT
CTTGGTTTTG ACCGTCAAAA ACTTTTATCC CTGAGCTGGT CGGATATTAC CGATGCCGCC
ATCGGCAACC TTCTGTCACG CACCCAGCGA CTGAGTACGG CGGCCCCCGT CCCCATGGAG
GCCACGTTTA CAGGTAATCG TGGGCGCACC TTTGTGGGCG ATGTCAGCGT TACGCATCTG
GAAATCCAAG ACCAGGTATT GTTTTTCGTT CTGGTGCGGG ATATCACCGA ACGCAAGGCA
GCCGATACCA TGCTGCGAAA ACAAAAGGCG CGACTGAATT ACCTCGCTTA TCATGACGTA
TTAACCGGTT TGCCCAATCG ACTCAAGGCC ATAGAGCTTT TGCAAACCTA TATCGGGCGG
GCCAACCAGC GCGATACCAT GGTTGCGGTG TTGATTTTCG ATCTGGATCG GTTCAAGAAT
CTCAACGAGT CCCTGGGGCA TGAGACGGGT GACGAAATTC TCATGGAGGT GGCCCGGCGA
ATTCAGGAAA TGCTGCGTGA CACGGATGTG GTGGCGCGGT TCGGCGGGGA TGAGTTTCTG
GTTTTGCTGG AGCATGTGGC GGATAGCACC GGCGTTAAAC ATGTGGCCGA AAAACTGTTG
GAAGCCATTG CCCAGCCACT GCGGATCGGC GAACAGCAAT TCTATCTCAC CGGTAGCATC
GGCATAAGCT TGTACCCCAA GCATGGCGAA AATGCGCAGA CCATTCTGAA GGCGGCGGAC
AGTGCCATGT ATTTTGCGAA AGAGCAGGGC CGTAATACCT ACCGGTTTTT TATCCCTTCG
ATTAATGTCG AGGTGGAGGA ACGGCTCTAT CTGGAGACGG ACCTGCGCCA GGCGCTCAAC
CTGGAACAGT TCATGCTGTT CTATCAACCG GAATTCAATT TGCACACTGG CAAGGTGGAA
TGCCTTGAAA CCCTGTTGCG CTGGCAGCAT CCGAAGCGGG GGATCGTGGG ACCCGGTGAA
TTTATCCCCC TGGCCGAGGA TACGGGGCTG ATTGTACCTA TCGGTGAGTG GGTATTGCAG
GAGGCTTGCA GGCAGGTCAT AGCCTGGAGA GAACAGGGCC TGCCATCGAT ACGCGTGGCG
GTCAATATAT CCGCACGCCA GTTCCGGCAA TCAGGATTTA TCGAAATGGT TTTCCGGGTC
CTTAAGCAGT ATGGTCTGGC TGCCGAGTGG CTCGAGTTGG AGATTACCGA AAGTTTCGTA
ATTCAGAGCG CCGAGCATGC ACTTAATATG TTCAAGGTCT TGCGGCAGTC CGGGATCAGC
CTGGCTGTGG ACGATTTCGG GCAGGGCTAT TCTTCCTTAA GTTACCTGAG AAAGTTTCCC
TTCACCAAGT TAAAGATGGA TCGCGCTTTT GTGAAAAACG TGGTGAACGA TCCCCATGAC
GAAGCGATCG CCGCAGCCAT TATCGCCATG GGGGATTCGC TGGGACAGGA GGTGGTTGCC
GAGGGGATCG AAACCCGCGA ACAACTCGAT ACCCTGCGCA CACTCGGTTG CCCCTGCGGG
CAGGGCTATT ATCTGGCCTT GCCCATGGAA GGCCCCAAGA TGGCGGAATT TCTGCAACGC
GTCACGGGCG ATAGCCCGGC GGTGCTGAGG GCCTTTCGTA AATAA
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| Protein sequence | MKWSWKRFLG MGLVILFLNG TLLMLNRGVF LKSFTRLEND RAYETLHRVV GVYQENLAFL
ERMTKDWANW DDAYAFMQTR DPSFITSNVV DSTFSTLNVN VILFLDEQGL PVAGKAYDLI
RHGAVPMYVG LQDHFTTESF ATLVEHQRRG VTGLLRLPQG LLMLSWQPIL TGEGQGPSRG
ALLMGRLLDS RELDRLGAKA EQSLEFGRLH SGPSWPSWSE QSTAAPEILL RVVDATRIRA
RVLFRDIFGV PAAVIGTNLS RDIYAQGLQS IIYFHIWLLV VSLMAGVCIL VIWDRLAGSR
QRQRDSEHLF QHLFQFSADA FFLCEEQGRF VDVNHQSCAV LGFDRQKLLS LSWSDITDAA
IGNLLSRTQR LSTAAPVPME ATFTGNRGRT FVGDVSVTHL EIQDQVLFFV LVRDITERKA
ADTMLRKQKA RLNYLAYHDV LTGLPNRLKA IELLQTYIGR ANQRDTMVAV LIFDLDRFKN
LNESLGHETG DEILMEVARR IQEMLRDTDV VARFGGDEFL VLLEHVADST GVKHVAEKLL
EAIAQPLRIG EQQFYLTGSI GISLYPKHGE NAQTILKAAD SAMYFAKEQG RNTYRFFIPS
INVEVEERLY LETDLRQALN LEQFMLFYQP EFNLHTGKVE CLETLLRWQH PKRGIVGPGE
FIPLAEDTGL IVPIGEWVLQ EACRQVIAWR EQGLPSIRVA VNISARQFRQ SGFIEMVFRV
LKQYGLAAEW LELEITESFV IQSAEHALNM FKVLRQSGIS LAVDDFGQGY SSLSYLRKFP
FTKLKMDRAF VKNVVNDPHD EAIAAAIIAM GDSLGQEVVA EGIETREQLD TLRTLGCPCG
QGYYLALPME GPKMAEFLQR VTGDSPAVLR AFRK
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