| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2297 |
|---|
| Symbol | |
|---|
| ID | 3724989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | + |
|---|
| Start bp | 2680066 |
|---|
| End bp | 2681334 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637751898 |
|---|
| Product | sensor histidine kinase/GGDEF domain-containing protein |
|---|
| Protein accession | YP_357706 |
|---|
| Protein GI | 77919891 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 64 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAT CGAAACGCGG GAAAACTATA AAAGCGGGCA GAATAGGCAA ACGGCTACTC
ATTGCCATTA TCCTATTCAG TTCCGTAATC ACGCTCTTCA CTTCGGCGAT TCAACTTTAT
ATCGACTTCA ATGACGACCT CGAACACATC CATATTCAGT TCGATCAAAT CGAAAAACTG
CATCTCAAGC CGTTAGCTGA AAACGTCTGG AGTTTTTACG ATGAGATGAT TATGGTCCAA
CTCCAGGCGT GGGTGGAACT TCCTGCAATC GAATACCTGG AAGTTAGCGT TGAAAATCAC
CGGGGCTGGA AGGCCGGCAC CATTCCCCAT GGTAAAACCA TAGAGAAAAG CTTTAAACTG
ATCCATTCAT CCCCCCACAG GCAAATCGAT GTCGGCACCC TCCGGGTTAT CGCCAGTCTG
GATGAAACCT ACCATTCCCT GATTAGGAAA TGGGGAGTTA TTCTGTCCAC CAACATAATC
AAAATATTCC TGGTGGCGTC GTTTATATTT TTCCTGTTTC ATTTCCAGGT CACCCGGCAT
TTGCTCCACA TTGCCAGTTT CACCAACGAT TTGGACGTCA ACAAATCCTT CATCCCGTTA
AAACTGTCCA GAAAAGACCA TCCAAACCGT GAGGACGAAC TGGATAAGAT TGTCCGGGCC
ATCAACAATC GGACCCAAAC CCTGAAAAGC AATCAGGATT ATCTTGAAGA CAGAATCGCC
GAACGCACCA AAGAACTGGA AACGCAGAAG AAAATCGCTG AAAACCTGGC ACGCCTTGAC
CCGCTCACAG GCTTGAGTAA CCGCCGGGCC TTTTTCGAAT ACGGGCTGCT GTTGGAAAAT
CAAATTGCAC GCCACCATCA CCATTTTTCG ATCATCATGT TGGACATCGA CCATTTCAAA
AAAATAAACG ACTGCTATGG CCATGAGATG GGGGACGAGG CCCTGAAAAC CCTGGCCGAA
CACCTGAATG CCATTGTGCG CTCATCGGAC ATACTGGGGC GTCTGGGCGG GGAGGAGTTC
GCGATCATCA TGCCCCATGC CAGCTCAGAA GAGGCCGCCA TAATGTCCGA AAGGCTTAAA
ACGGCCATTT CCAAGATTGT TCTGTCCGAT AATGAACAAA GAATTCGGTT TACGGTCAGT
TTTGGCATTG CCGAATGCAA TGAAAAGATC ACCTCTTTTC AGCAAGTCCT GAACAATGCC
GACAAGGCCT TGTATCAAGC CAAAAATGAA GGCCGCAACA CTTTTCGGAT ATATCAGGGC
GAATGTTAG
|
|---|
| Protein sequence | MKQSKRGKTI KAGRIGKRLL IAIILFSSVI TLFTSAIQLY IDFNDDLEHI HIQFDQIEKL
HLKPLAENVW SFYDEMIMVQ LQAWVELPAI EYLEVSVENH RGWKAGTIPH GKTIEKSFKL
IHSSPHRQID VGTLRVIASL DETYHSLIRK WGVILSTNII KIFLVASFIF FLFHFQVTRH
LLHIASFTND LDVNKSFIPL KLSRKDHPNR EDELDKIVRA INNRTQTLKS NQDYLEDRIA
ERTKELETQK KIAENLARLD PLTGLSNRRA FFEYGLLLEN QIARHHHHFS IIMLDIDHFK
KINDCYGHEM GDEALKTLAE HLNAIVRSSD ILGRLGGEEF AIIMPHASSE EAAIMSERLK
TAISKIVLSD NEQRIRFTVS FGIAECNEKI TSFQQVLNNA DKALYQAKNE GRNTFRIYQG
EC
|
|---|
| |