Gene Pcar_2213 details

Gene Information

• Locus tag: Pcar_2213
• Symbol: ligA
• ID: 3724925
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: +
• Start bp: 2586583
• End bp: 2588598
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637751814
• Product: DNA ligase, NAD-dependent
• Protein accession: YP_357622
• Protein GI: 77919807
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00000000000000618814
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACAAGG CACAACGAAT CCGCCGTTAT CAACAACTGT GTGACGAACT GCATCGCCAC 
AGCAGGCTTT ACTACACCTA TGATCGCCCT GAAATAACCG ACGCGGAATA CGACCGCCTG 
TTTCGGGAAC TGCTTGAGTT GGAAAAAGCG TATCCCGAGC TGGTGACGGC CGCTTCGCCG 
TCCCTGCGCG TAGGCGCTTC GCCTCTGTCG CAATTCACGC CAGTACCCCA CAGCCGCCCC 
ATGCTGTCCC TGGAAAACGC TCTGACCGAA GATGAACTTT ATGACTTCGA CGCCCGCATC 
CGGAAACTTC TGGCCAGCGA TGCACCGGTG CGGTACGTTT GCGAGCTAAA AATGGATGGG 
GTAGCGGTCG AATTGGTCTA TAGAGACGGA ATCCTCTCCG TCGGATCCAC CCGCGGCGAC 
GGGACCACCG GCGAGGGCAT CACCGAAAAC CTGCGCACGA TCCCCTCCAT ACCTCTGGTA 
CTGAGCGGCG AAGCGCCTGC GCTTCTGGAA GTTCGCGGCG AGGTCTATAT CGACCTGGAC 
GACTTTCAAA AACTTAACCA TGAGCGCGAG GAAGAAGGCT TACAGGTATT TGCCAACCCG 
CGCAACGCCG CCGCCGGCAG TCTGCGCCAA CTCGACTCCG CAGTCACCGC CAAGCGACCA 
CTGAAAATAT TCTGCTACGG CATCGGCCAG CTTTCCGGAG AACATCCCGC CAGCCACCAC 
TCATTGCTGA AGTGCATGCA TCGGTGGGGA CTGCGCGTCA ATCTGGAACA CTCGCGCACC 
CTTGAAGGCA TCGAACAAGT CACGGACTAT TTCCGTCAGC TGCAACAGCG CCGAGACGAA 
CTCCCCTACG AGATCGATGG CATGGTGGTC AAAGTCGACG ATCTGGCCCT GCAACGCGAA 
TTGGGGGAAA AAACCCGTAC CCCCCGCTGG GCCATTGCCT GCAAGTTCCC CCCCCGTCAA 
GCGGTTACTG TGGTTGAAGA TATCGTGCTG CAAGTCGGGC GTACCGGTGC CATAACGCCG 
GTGGCGCAAC TGAAACCCGT TGAGGTCAGC GGTGTCACGG TATCGCGCGC CAGTCTGCAC 
AACTGGGATG AAATCGCGCG CCTCGACGTT CTGATAGGCG ACACGGTGGT TGTCGAGCGC 
GCCGGCGACG TCATCCCCGA TGTCGTCAAG GTACTGACGG AACACCGTAA CGGCCAAGAG 
CGCAGCGTGC CCCTACCGCA AAGCTGCCCG GCTTGCGGCG GACCGGTGGT CAAGCTCGAA 
GGTGAAGTGG TGCCGCGTTG CCAGGAAATG TCCTGCCCGG CGCGCCTGCG CGAATCGATT 
AAACATTTCG TCGCCCGTCG CGCCATGGAT ATCGATGGCC TCGGTGAACG CACCATCGAG 
CAACTGCTGA AACGGGAGCT CATCAAGAGT GTGGCGGATC TTTACCATCT TACCAAAGAA 
GACCTGTTGC TTTGCGAACG CCTGGCGGAC AAATCGGCGG AAAAACTGTT GACCGCCATC 
GCCGCAAGCA AAACCCGCCC TTTGGGTCGC TTCCTTTTTG CCCTGGGCAT TCGCCACGTG 
GGGGAACACC TGGCCAGTCT GTTGGCCCGG CAGTTCGGCT CTCTGGATGC CTTGTCGCAC 
GCCACCCGCG AGGAACTGCT GGCCATACAC GAGATCGGTC CCCAGGTCGC CGACAGCGTC 
ACCGATTTTT TTGCCAAATC GCGCAACCGC GAGATTCTCG CTGCTCTGCA ACGCGCCGGG 
GTTGCACCGC AAGCGGAAGA GAAGCGCAGC GGCGGCCCCC TGACTGGCAA GTCCTTCGTA 
TTTACCGGTA GCCTGACCCG TTTCTCACGC AAACAGGCGC AGGAAATGGT GGAACGGTTG 
GGTGGACGCG CCAGCGGTTC CGTCAGCAAA AAAACTGACT GCGTGGTTGC CGGTGAAGCC 
GCTGGCAGCA AGCTGGAAAA GGCTCGTCAA CTCAACATCC AGATTCTCAG CGAAGAAGAG 
TTCCTGCAGA TGATCGACAC ACTGGAGGAG GCATGA 

 

Protein sequence

MDKAQRIRRY QQLCDELHRH SRLYYTYDRP EITDAEYDRL FRELLELEKA YPELVTAASP 
SLRVGASPLS QFTPVPHSRP MLSLENALTE DELYDFDARI RKLLASDAPV RYVCELKMDG 
VAVELVYRDG ILSVGSTRGD GTTGEGITEN LRTIPSIPLV LSGEAPALLE VRGEVYIDLD 
DFQKLNHERE EEGLQVFANP RNAAAGSLRQ LDSAVTAKRP LKIFCYGIGQ LSGEHPASHH 
SLLKCMHRWG LRVNLEHSRT LEGIEQVTDY FRQLQQRRDE LPYEIDGMVV KVDDLALQRE 
LGEKTRTPRW AIACKFPPRQ AVTVVEDIVL QVGRTGAITP VAQLKPVEVS GVTVSRASLH 
NWDEIARLDV LIGDTVVVER AGDVIPDVVK VLTEHRNGQE RSVPLPQSCP ACGGPVVKLE 
GEVVPRCQEM SCPARLRESI KHFVARRAMD IDGLGERTIE QLLKRELIKS VADLYHLTKE 
DLLLCERLAD KSAEKLLTAI AASKTRPLGR FLFALGIRHV GEHLASLLAR QFGSLDALSH 
ATREELLAIH EIGPQVADSV TDFFAKSRNR EILAALQRAG VAPQAEEKRS GGPLTGKSFV 
FTGSLTRFSR KQAQEMVERL GGRASGSVSK KTDCVVAGEA AGSKLEKARQ LNIQILSEEE 
FLQMIDTLEE A