| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2152 |
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| Symbol | vacB |
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| ID | 3724844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 2505594 |
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| End bp | 2507756 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637751753 |
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| Product | exoribonuclease RNase R |
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| Protein accession | YP_357561 |
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| Protein GI | 77919746 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 49 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCTGA CGCCCGATGA TCTCTTGAAA CTATTGAGTC AAAACCGGGG GAAGCCACTA
TCCGGACGGC AGATCGTTTC ACAATTCCAG CTTTCGCGAG ATCAGCGTCA GCATGCGTTG
CGCATGCTGG ATTCCCTGGC CGATGAGGGA TTGGTGCGGC GGGTTAGAAA AGGACTCTTT
TCTTTGCCCA GGTCGAGCGA AATGGTTGTC GGCAAAGTGT CGGTGCACCG GCAGGGGTAT
GGCTTTGTCA TTCCCGAAGC TGCCGGTCAA GCCGATGTGT TTATACCGGC CAGGTATATG
CGGGAAGTCA TGGATGGGGA TCGTGTCGCC GTTCGTGTCC AGCGTTCTTC CCGAGGCGGA
TACGAGGGGC GAGTTCTTCG GGTACTGTCC CGGGCCCATC AAACGATCGT TGGCACGTAT
CGTCCCGGAC ATGGATACGG CATGGTGTTG CCCAGCGATC CAGCGCTTTC CCATGGCATA
ATGCTTTTGT CCCCGGCGCC AGGCGATGCT CATGCCGGGG ATCTTGTTGT TGTGTCCATT
GCACAGTACC CTGGCCGTCG GGAGCCCCCC CGGGGTGTCA TGGTTGAGGT GCTTGGAGAT
CCTGCCGATC CTCAAGTAGA AATCCTGGCT GCTGCCTATA AATTCAATCT CCCCCGCGAG
TTTTCCACCG CAACCCTGGA GCAGGCACGA TCCATCGCCC CGGTGGTTAG GGAGGAAGAC
CTCGCCGGTC GCGAGGATCT GCGCAGCACG CTGTTCGTGA CCATCGACGG AGAGACCGCG
AAGGATTTTG ATGATGCGGT GGCCGTCAGC CGGGAACCCG GTGGTTGCAT GCGGCTGTGG
GTGGCTATCG CCGATGTCGG TCACTACGTT GCACCTGACA GTCCTATTGA CCGGGATGCC
AAAGAGCGCG GAACGAGTGT TTATTTCCCC GGCAGTTGTT TGCCGATGCT GCCCGAGGCG
CTGAGTAACG GCATCTGTTC GCTGAATCCC GGCGTTGACC GCCTGGTACT GACTGCCGAG
ATGCTTTTTG ATAAACAGGG AGTCATGCTG GAAAGCCGCT TTTTTCATGC GGTCATATGC
AGCAAGGCAC GGTTGACGTA TCGTGAGGTG GCCGATGTGT TGGCCGCGGG GGCAATTCAT
AACCCCGCTT TGTCGGATCC GCTGATTTCC CAGCTGCATC ATATGTCCGA ACTCGCCTCA
CGATTGCAGG CCATGCGTTT TCGCCGGGGC AGCCTCGACT TTGATTTGCC GGAGCCGGAA
ATCGTTCTCG ATCTCCAGGG GCGGCCCGAT CAGATCTTGC GTGCCGAACG TACGGTGGCT
CATCGTTTGA TCGAAGAGTT CATGTTGGCC GCCAATGAAG CTGTGGCCAA GTTTTTGTCG
GATAGAAATA TCCCTCTGCT TTACCGGATA CATGAATCTC CGGAAGTGGA GAAACTTTTC
GCTTTTCAGA CGTTTCTTGC CCATTTGAAC ATTGGCCTGG TGGTGACTGA CGATTCCGTA
TCGCCGACCG TGTTGCAGGG AGTGCTTGAA ACGGTTCGTG ATCGTCCCGA AGAACGCATG
GTCAACCAGT TTTTGCTGCG AAGCATGAAG CAGGCGCGTT ACAGTTCCGA TAATCTCGGA
CATTTCGGCC TTGCTTCCGA CTGCTACTGC CACTTTACGT CACCTATCCG GCGTTATCCC
GACCTGGTTG TGCATCGTAT TTTGAGCAGG GCACTGTCGA CTTCAAAGAG ATCCTCTGCA
ACGGTCAACC TTGAAGAACT TGGTGACCTT ACCTCTCAAA AAGAGCGGCG CGCCATGGAA
GCTGAACGGG ACATCGTAGC ACTTAGACGG TGCCAGTTCA TGGCCGATAA AGTTGGACAG
GTCTTCGATG CGTGCGTGGC CGATGTACAG CCTTTCGGGA TATTTGTTGA ACTCAAGGAT
GTTTTTGTCG AAGGTCTGGT GCATGTTGCC ACCTTGACTG ACGATTATTA TGAATTTGAC
GAGGAGTTGC ATCGTCTGGT AGGTCAGCGA CGCCGAAAAA TTTTTCGTAT CGGCGAGGTG
GTGACGGTAC AACTTGTGAA AGTAAACCTG GAGCGCAGAG AGCTCGATTT TGAACTGCAA
GGGATGCGGA CCGATATGGC ATCAGCCACT GCCGGTCGCC GGCGCAGTAA AAAGAAGTGT
TGA
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| Protein sequence | MNLTPDDLLK LLSQNRGKPL SGRQIVSQFQ LSRDQRQHAL RMLDSLADEG LVRRVRKGLF
SLPRSSEMVV GKVSVHRQGY GFVIPEAAGQ ADVFIPARYM REVMDGDRVA VRVQRSSRGG
YEGRVLRVLS RAHQTIVGTY RPGHGYGMVL PSDPALSHGI MLLSPAPGDA HAGDLVVVSI
AQYPGRREPP RGVMVEVLGD PADPQVEILA AAYKFNLPRE FSTATLEQAR SIAPVVREED
LAGREDLRST LFVTIDGETA KDFDDAVAVS REPGGCMRLW VAIADVGHYV APDSPIDRDA
KERGTSVYFP GSCLPMLPEA LSNGICSLNP GVDRLVLTAE MLFDKQGVML ESRFFHAVIC
SKARLTYREV ADVLAAGAIH NPALSDPLIS QLHHMSELAS RLQAMRFRRG SLDFDLPEPE
IVLDLQGRPD QILRAERTVA HRLIEEFMLA ANEAVAKFLS DRNIPLLYRI HESPEVEKLF
AFQTFLAHLN IGLVVTDDSV SPTVLQGVLE TVRDRPEERM VNQFLLRSMK QARYSSDNLG
HFGLASDCYC HFTSPIRRYP DLVVHRILSR ALSTSKRSSA TVNLEELGDL TSQKERRAME
AERDIVALRR CQFMADKVGQ VFDACVADVQ PFGIFVELKD VFVEGLVHVA TLTDDYYEFD
EELHRLVGQR RRKIFRIGEV VTVQLVKVNL ERRELDFELQ GMRTDMASAT AGRRRSKKKC
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