Gene Pcar_2149 details

Gene Information

• Locus tag: Pcar_2149
• Symbol: pilB
• ID: 3724841
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 2501930
• End bp: 2503630
• Gene Length: 1701 bp
• Protein Length: 566 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637751750
• Product: type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
• Protein accession: YP_357558
• Protein GI: 77919743
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
• TIGRFAM ID: [TIGR02533] general secretory pathway protein E; [TIGR02538] type IV-A pilus assembly ATPase PilB

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 0.365322
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAGTA ACCGACTCGG CGAATTGCTG GTTCGCAATG ATTTGATAAG TGCCGAGCAA 
TTGAACCAGG CTTTGGAGGA TCAAAAGCTG AACGGCGGGC GCCTCGGCAC CTGCCTGGTG 
CGCCTCGGTT TTGTCAAGGA AGAGGAACTT TCCGCATTTC TGTCCAAACA GTACGGTGTC 
CCGTCCATCA ATCTCAACGA TTTCGAAATA GATCCCGACG TCATTCGTCA CGTACCTGCC 
GAAATCTCCC AGAAATATCA GATTGTTCCC GTCAACCGGG CGGGTTCCAC GCTGATCGTG 
GCCATGAACG ATCCGTCCAA TCTGTTTGCG ATTGACGATC TCAAGTTCAT GACCGGGTTC 
AATATCGAGG TGGTGGTCGC CACCGAGTCG GCGATCAAGG CGGCGATCGA TAAATATTAC 
GACCAGAGTG CCACCTTCGC CGATGTTATG GAAGATCTCG AAGATATAGA TCTCGAGGTT 
GTCGACGAGG AAGATGACGT TGATGTTAAT GCTCTGGAAA AGGCCACGGA GGACGCGCCA 
GTTGTCAAGC TGGTCAACCT TATCCTGACC GACGCCATCA AGAAAAAAGC CTCCGATATT 
CATATCGAGC CCTATGAAAA GTCGTTCCGG GTCCGTTACC GTATCGACGG TGTGCTCTAT 
GAGGCGATGA AGCCGCCCAT GAAACTCAAG GCGGCCATAA CATCCCGTAT CAAGATCATG 
GCGGAACTGG ATATTGCCGA ACGTCGCTTG CCGCAGGATG GTCGTATCAA GATCAAACTG 
CCCGGCGGCA AGGACATGGA CTACCGGGTC AGTTGTCTGC CGACCCTGTT CGGTGAAAAG 
ATCGTCTGCC GGTTGCTCGA TAAATCCAAC CTGCAGCTCG ATATGACCAA GCTGGGGTAT 
GATCCGCAGC CGCTGCAGTG GTTCAAGGAG GCCATTCATA AGCCTTTCGG CATGGTTCTG 
GTTACCGGGC CGACCGGTTC GGGCAAAACC GTATCGCTTT ATTCGGCGCT TGCGGAACTG 
AACGATACCT CCCTCAACAT CTCAACCGCC GAGGACCCGG TCGAATTCAA CTTTGCCGGT 
ATCAACCAGG TGCATATGCA CGAGGAGATC GGCCTCAACT TCGCCGCGGC GTTGCGCTCT 
TTTTTGCGGC AGGATCCCGA TATCATCATG ATTGGCGAGA TCCGCGATTT TGAAACCGCC 
GAGATCGGCA TCAAGGCGGC ATTGACGGGT CACATGGTGT TATCGACCCT GCATACCAAC 
GATGCCCCCA GCACCATCAG CCGTATGCTC AACATGGGGA TCGAACCCTT CCTGGTAGCA 
TCGGCGGTCA ACCTGATTAC CGCACAGCGC CTGGGGCGGC GCGTCTGTAA AGAATGCAAA 
GAGGTTGAGG AAATCCCCAA ACAGGCCTTG ATCGATGCGG GTGTGTCTCC GGAAGCCGTG 
GACGAGTATG TCTGCTACCG CGGTGCCGGA TGCGATGTCT GCAATAATAC CGGTTACAAA 
GGGCGTGTCG GCATTTATCA GATCATGCCC ATGTTCGAGG AAATCCGCGA ACTGGTTCTG 
GCTGGGGCCA ATACCTCCGA AATCAAACGC GAATCGATGC GTCTCGGGGT TAACACCATG 
CGTCAATCCG CGTTGATCAA GCTTAAGGAA GGCGTTACAT CTTTCGAGGA AGTTTTACGC 
TGCACCGTAT CGGATGATTA A 

 

Protein sequence

MTSNRLGELL VRNDLISAEQ LNQALEDQKL NGGRLGTCLV RLGFVKEEEL SAFLSKQYGV 
PSINLNDFEI DPDVIRHVPA EISQKYQIVP VNRAGSTLIV AMNDPSNLFA IDDLKFMTGF 
NIEVVVATES AIKAAIDKYY DQSATFADVM EDLEDIDLEV VDEEDDVDVN ALEKATEDAP 
VVKLVNLILT DAIKKKASDI HIEPYEKSFR VRYRIDGVLY EAMKPPMKLK AAITSRIKIM 
AELDIAERRL PQDGRIKIKL PGGKDMDYRV SCLPTLFGEK IVCRLLDKSN LQLDMTKLGY 
DPQPLQWFKE AIHKPFGMVL VTGPTGSGKT VSLYSALAEL NDTSLNISTA EDPVEFNFAG 
INQVHMHEEI GLNFAAALRS FLRQDPDIIM IGEIRDFETA EIGIKAALTG HMVLSTLHTN 
DAPSTISRML NMGIEPFLVA SAVNLITAQR LGRRVCKECK EVEEIPKQAL IDAGVSPEAV 
DEYVCYRGAG CDVCNNTGYK GRVGIYQIMP MFEEIRELVL AGANTSEIKR ESMRLGVNTM 
RQSALIKLKE GVTSFEEVLR CTVSDD