Gene Pcar_2136 details

Gene Information

• Locus tag: Pcar_2136
• ID: 3724828
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 2488369
• End bp: 2488980
• Gene Length: 612 bp
• Protein Length: 203 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637751737
• Product: pilus assembly protein, PilO-like
• Protein accession: YP_357545
• Protein GI: 77919730
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3167] Tfp pilus assembly protein PilO

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.000000000000460184
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCCTA AACTGGACAA GGTTCTTAGC CTTCCGAATT ATCAAAAACT TCTTTTGCTG 
TTGCTGGTCT GTTCTGTTAT TTTTGGCCTT TTTTGGCTCG TTGTTTATCA ACCGATGGGG 
AAAGAGCTCG ATAGATTGCA AAGGCAAAAA GGAGGGTTAG AGCGGAAGCT TGCCGAGGAC 
AGGCGAATTG CCGATAATTT GCCGAAATTT CGTGCGGAAT ACGAAAAACT AGAAAAACAG 
CTTGAGGTAG CCCTTAGGGA GTTGCCCAAC AAAAAAGAGA TATCTTCGCT TCTGGTCGGA 
ATTTCTTCTC TTGCTAAAAA TACCGGTTTG GAGGTCGTCG AATTTAAGCC CTCCGCTCCG 
GTTCCTCAGG GGTTTTATGC TCAGGTACCT GTCTCTTTAA GATTAAAAGG ATCATTCCAT 
GAGATTGCTA TGTTTTCATA CCATGTCGGA AACATGACTC GCATAGTCAA TCTCAGTAAT 
CTCAGGATGG GAAATGCCAA GGTCGAAGAT GGTAGAAATT TATTGAGTGT TGAATGTAAG 
GCGACGACCT TTCAGTTTAT CGACACTCCT GTCGATAAGG CCAAAACGGG AAAAAGGAAG 
GGTAGAAAAT AA 

 

Protein sequence

MNPKLDKVLS LPNYQKLLLL LLVCSVIFGL FWLVVYQPMG KELDRLQRQK GGLERKLAED 
RRIADNLPKF RAEYEKLEKQ LEVALRELPN KKEISSLLVG ISSLAKNTGL EVVEFKPSAP 
VPQGFYAQVP VSLRLKGSFH EIAMFSYHVG NMTRIVNLSN LRMGNAKVED GRNLLSVECK 
ATTFQFIDTP VDKAKTGKRK GRK