| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2075 |
|---|
| Symbol | |
|---|
| ID | 3724766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 2417827 |
|---|
| End bp | 2420793 |
|---|
| Gene Length | 2967 bp |
|---|
| Protein Length | 988 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637751676 |
|---|
| Product | signal transduction protein |
|---|
| Protein accession | YP_357485 |
|---|
| Protein GI | 77919670 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCGTT GCGATTCAAC AGTTTTTTAT GGTTCTTTGC GATGCCTGTC ATTGTTAGGT
TGTTTTTTGC TGTGGTGCTT TTGGCTTTCA CCGACGCCGT CTGTCGCCGA TACTTCCGTC
AAAAGAATCC TCTATCTCAA TTCCTACCAC CAAGGTTACA AATGGAGCGA TGATATCACC
CGCGGCATCA GCGATGTGCT GATGGCCGAA AAGGGCCGAT TTCGTATTTA TACCGAGTAT
ATGGATACCA AAAGGCGCTC CCCCGGTATC ATGCGCGACC AGATACGTTC TGTCCTGCAA
ACCAAATATC CTGCCGATTT TTTCGATCTG ATTCTGTCTT CCGACGATGC TGCATTCGAC
TTTCTTCTGG CCCGGCGTGA AGAATTGTTC GGATCGACTC CCGTGGTTTT TTGCGGAGTC
AATTATCTTG ATCCAGACCG TCTCATCGGG CAGAAGAGGC TGGTCGGCAT CAGTGAGGAA
GCCAACATCG CAGAAACGCT CGATACCGCC CTGAGTCTGC ATTCCGATAT TCGGCAGATC
TATATTGTTG CCGACAAAAC CCCGACCGGA TTGAAGGTTC GTCAGAAAAT CGCCGATATG
CAGGTCCGTT ATCGCCAACG GTTGGCGTTT CACATATTAC CCGACACGTC CGTTGCTGAT
ATCGCTGTAC GTTTGCGGCA GCTGCCCAAG CATAGTCTGG TGTTGTATAG CGTTTTTTTC
AAGGATGCCT CGGGACAATT TTACGAATAC GACGAAGCGC TGCCCCGGCT GGTGGAGAAT
TGCAAGGTTC CTGTGTATGG TCTGTGGGAT TTCAATCTCG GCCAGGGAAT CCTCGGCGGC
AAGCTGACCT CCGGCTACCG TCAGGGGCAG CAGACCGCCG CTCTTGGGTT GGAAATTCTC
CAAGGAGTGC CGCTTGTTGC CTTGCCCCAA CTAAGTTTGA GCAAGGCCGC ATACCGTTTC
GATATGCGGC AGCTTAATCG CTTTGGCATC AGTGTGGACG ATCTGCCGCC GGACACTACC
CTGGTCAACA CGGAGCACCC TCTGGCGATT CGCTACCGTG TGGTATTGTT TGAAAGTCTG
GCCGCTATCC TGGTGTTGGT GGCGGTGATT TTATCGCTGT TACGCATCAT CCGACGTCGT
AAACGCACCC AGCTTGCCCT GGAACAGGAC CGCAGCAAGT TGGAGGCGAA GGTCCTGGCG
CGTACGGCGC ATTTGACGGA GGCCAATCGC CAATTGCGTA TGGAAATCCT GGAACGGAAT
CAGGCCGCAC GCGCCCTGAA AGAGTCGGAA CAGGAAAAGA GTCTCATTCT TAACAGCTCC
TCCGATCTGA TCGCCTACCT CGATCCGGGT CTGCGTATTC GCTGGGCCAA CCGGACTTCG
AGCGATCGGG CCGGACGTCA ACAAACCCAG ATTGAAGGAT TGCCCTGCTA TGCAGCCTGG
CATGGGCTGG ACAGTCCGTG TATCGGGTGT CCCGTTCTAC GCTCCCATAA GACCGGTTTG
CCGGAGCATG GTGAAGTGGT CACGTCCGAC GGCCAAATAT GGCTGGTGCG GGCTTTTCCT
TTTCATGACA GTCAGGGACG GGTAAGCGGG TTTGCAACCT TCAGTCTCGA TGTGAGCGAA
CAGAAAAAAG CGCAGCGTAC CATTCATCGT ATGGCCTATT ACGATCATCT GACGGAACTG
CCCAATCGCG CTCTTTTTCA AAAAGAACTG GATCGTCGGT TGGAGGAAGC GGTCGGCCGT
GGACACGGAC TGGCTCTGAT GTTTCTCGAT CTTGATCATT TCAAAGGGGT TAACGATTCT
CTGGGACACG CCAAAGGGGA TCTGTTGCTG CAGAAGATCG CCGCAAGGCT GCAGGGCTGT
CTGGGGCGCG AGGACTTTTT GGCGCGCCTT AACGGCGACG AATTTATCTT TTTGCTAACG
GAAATCGACG ACCCGGTAGC CGTGAAGGCG CTGGCCGGTA ATGTGCAGCG CATCATGGCC
TCCCCTTTTA ATCTCGATGG CGACGAAATT TATGTCGGTA CCAGCATTGG CATTGCATGT
TATCCGCTGC ACGGTGTCGA TGTCGAAAAT CTCATGAAAC GGGCCGATCG TGCGCTGTAT
GCGGCCAAGG AGCGCGGGCG CAATGCCATT GAGCTGTTTT CCGAACAGAT CAATGCCCGC
TTTCATCGCC GCCAGCAACT GGAAATGCGA TTGCAAAACG CCTTGGCAAA GAACGAATTC
TTCCTGGAGT ATCAACCGCA GGTTGATCTG CAAACCGGTC GGATGTTAGG TGTGGAAGCC
CTGTTGCGCT GGCGTAATGA CGATTTAGGG TTGGTTATGC CGGATGATTT TATTTCCCTG
GCCGAGGAAA CCGGGTTGAT CCGTCCCATA GGCGAGTGGG TATTACGCAC GGCGTGTCAG
GAGTATTTGT CCTGGTGGCA GCCGGAGGGG GCCGAGTTGC GTCTTGCTGT CAACATATCG
GGACAACAAA TCAAACATCC GGATTTTGTA CCGATTATCG ATGATATATT GCACTCCACC
GGCTTCGATC CGAGGTTGTT GGAACTTGAA ATAACCGAAA CGGTGGCCAT GGAGGATGTC
GAAGGCAATA TCGGCACTTT CCGTGATCTC AAAGCGCGAC GGCTGCAATT GGCCATCGAC
GATTTCGGTA CCGGTTATTC CTCCCTGAGT TATTTACGGC ATTTTCCCAT CGATCGGCTT
AAAATCGACC GCAAGTTTAT CCGGGATGCG GCTAAATGCA GCGACAGCGC TTCGCTGGTG
GAAGCGATTA TGAGTATGGC GCGCAGCCTG CATCTGGACA TCATCGCCGA AGGGGTGGAA
ACCGAAGAAC AGGTTGCCTA TTTGTGGAAG CAGGGTTGCC GGCAGATTCA GGGGTTCTTT
TTCGGTCGGC CGATGTCTGC AAGCGATCTG CAAAAATATC TTCAGGAACA AACCGTTGCC
GAACTGCTGC CAGCCTGGGT TTCATGA
|
|---|
| Protein sequence | MVRCDSTVFY GSLRCLSLLG CFLLWCFWLS PTPSVADTSV KRILYLNSYH QGYKWSDDIT
RGISDVLMAE KGRFRIYTEY MDTKRRSPGI MRDQIRSVLQ TKYPADFFDL ILSSDDAAFD
FLLARREELF GSTPVVFCGV NYLDPDRLIG QKRLVGISEE ANIAETLDTA LSLHSDIRQI
YIVADKTPTG LKVRQKIADM QVRYRQRLAF HILPDTSVAD IAVRLRQLPK HSLVLYSVFF
KDASGQFYEY DEALPRLVEN CKVPVYGLWD FNLGQGILGG KLTSGYRQGQ QTAALGLEIL
QGVPLVALPQ LSLSKAAYRF DMRQLNRFGI SVDDLPPDTT LVNTEHPLAI RYRVVLFESL
AAILVLVAVI LSLLRIIRRR KRTQLALEQD RSKLEAKVLA RTAHLTEANR QLRMEILERN
QAARALKESE QEKSLILNSS SDLIAYLDPG LRIRWANRTS SDRAGRQQTQ IEGLPCYAAW
HGLDSPCIGC PVLRSHKTGL PEHGEVVTSD GQIWLVRAFP FHDSQGRVSG FATFSLDVSE
QKKAQRTIHR MAYYDHLTEL PNRALFQKEL DRRLEEAVGR GHGLALMFLD LDHFKGVNDS
LGHAKGDLLL QKIAARLQGC LGREDFLARL NGDEFIFLLT EIDDPVAVKA LAGNVQRIMA
SPFNLDGDEI YVGTSIGIAC YPLHGVDVEN LMKRADRALY AAKERGRNAI ELFSEQINAR
FHRRQQLEMR LQNALAKNEF FLEYQPQVDL QTGRMLGVEA LLRWRNDDLG LVMPDDFISL
AEETGLIRPI GEWVLRTACQ EYLSWWQPEG AELRLAVNIS GQQIKHPDFV PIIDDILHST
GFDPRLLELE ITETVAMEDV EGNIGTFRDL KARRLQLAID DFGTGYSSLS YLRHFPIDRL
KIDRKFIRDA AKCSDSASLV EAIMSMARSL HLDIIAEGVE TEEQVAYLWK QGCRQIQGFF
FGRPMSASDL QKYLQEQTVA ELLPAWVS
|
|---|
| |