| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2039 |
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| Symbol | rne |
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| ID | 3724730 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 2370354 |
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| End bp | 2373134 |
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| Gene Length | 2781 bp |
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| Protein Length | 926 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637751641 |
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| Product | ribonuclease E |
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| Protein accession | YP_357450 |
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| Protein GI | 77919635 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000000375144 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAAAA AAATGCTCAT CAATGCCACC CATCCGGAGG AGCATCGGGT TGCTATTGTC
GAAGACGGAA TTCTGTCAGA ACTCGATATC GAAATTTCCG GCAAGGAGCA AACCAAAGGC
AATATTTACA AGGCCGTTGT AGCCCGCGTC GAAACGGGAT TGCAAGCGGC CTTTGTCGAT
TATGGAAGCG AACGTCTCGG GTTTCTTCAG ATCGGCGAAA TACACCCGGC TTTTTTCAAG
GAAGCCGAAG GACGGGTGGA GGCCGGCAAA CGCCCACGCA TCAACGATAT CCTGCGGCGC
GGCCAGGAAA TCCTGGTACA GATCGTTAAA GAGGAACGCG GCACCAAGGG AGCCGCCCTG
ACGACCTACC TTTCGCTACC CGGCCGTTAC ATGGTCCTGA TGCCCGATTC GGACACCAAA
GGCATATCGC GCAAAATCGA AAAAGAATCC GACCGCAAAA AGCTCAGGGA ACTCATGGAC
AGCCTCGAGA TCCCCGAGGA AATGGGCTAC ATTGTCCGAA CCGCCGGCAG CACGCAGAAA
AGAACCGACC TCAAACGCGA TGTCGACTAT CTGCTGCGCC TTTTCAATAA AATCCAATCC
CTTTCCGACA GCACCAAGGC ACCGTCCCTG ATCTATAAGG AATCCAATCT GGTCATTCGC
TCCATTCGCG ACTATTTCAG CGACGATATG GATGAAGTGC TGGTAGACGA CGCCAAGGTC
TCCACCGAAG CACGGGACTT CTTCCAGGAA GTGATGCCCG AATATGCCGA ACTGGTAAAA
CTGCACCAGG AGCGGCGGCC GATTTTCGCC CGCTACCAGA TCGAAGATCA GATCGAATCC
ATCGGTAAAA ACAAAGTCAT GCTCCCTTCC GGCGGGTCCA TAGTCATCGA CTCCACCGAA
GCGTTGGTGG CCATCGATGT CAACTCCGGC AAAATGGCCA GCGAGCAAGG CGTGGAAGCC
ACGGCCTACA AGACCAACCT TGAGGCCGCG GTCGAAACCG CCCGGCAATT GCGACTACGC
GACCTAGGCG GGCTGGTTGT TATCGACTTC ATCGATATGC GTGACCGAAA GCATATACGC
GATATTGAAA AAACCCTCAA AGAGGCCATG AAAACCGATA AGGCCAGAGT CACTATCGGG
CGCATCAGCC AATTCGGCCT GCTGGAAATG AGTCGCCAAC GCATCAAGTC CGCCCTTGCC
GCCGCCTCCT TCGAGGTCTG CCCGCATTGC AATGGCAGCG GCAAAATCAA GACGATAGAA
GCCCAGTCCC TGGGATTTTT GCGCCGCATT CACACCGGCC TCGCAAAAGG CCGTATCGGA
CGGGTGGAAG CCACGGTGCC CCTGGATGTC GCCAGCTATC TGCTCAATAA CAAACGCGTC
GAATTGATGG CTATCGAGCA GAAAAACGAC GTCAGCATTC ACATCAAAGG CTGCCCGGAT
TACATGAACG GCCAAGGCGA AATCGACTTC CATAAACGGG AGAAGGAAGA GACCCAGGCC
ACCGCCTATA TTGAAGCCAG CCAGGTCATG TCCGAAACCA ACAATGCGCA GCAGGATTCC
ACTACGGACA CCGAGGAAAA ACCTGCGAAA CGCAGACGCC GCCCCCGCAG ACGACGCAAA
TCGTCTGCCG CAACTCCCGT ATCGGAGCCC TCTACCCTGA CAACAGAATC AGAGGAGCAA
CAACCGGCTG CAACCCAGGA CGCTGCAGAA TCGCAACCGA TGGCAACAGA TACGGAAGTC
GCTCGGGAAG TCAGCGAAAA AACCGCTGAA CCGGTATCAA CCGAAGCGAC AGAGCCCGCT
GAAAAAACAG CCGAGCCGGC ATCGGCCGCG GAGGAGCAAC CGCAGAAACC GTCCCGACCG
CGCAGCCGCT CCGGCCGCCG CAAACCCGCT ACAAAAAAAA CCGAGGCCAA ACCTGAGGCC
AAACCTGAGG CCAAACCTGA GGCCAAACCG GAAGCCAAAC CGGAAGCCAA ACCGGAAGCC
AAACCGGAAG CCAAACCGGA AGCCAAACCG GAAGCCAAAC CGGAAGCCAA GCCGGAAGCC
AAACCGGAAG CCAAACCGGA AGCCAAACCG GAAGCCAAGC CGGAAGCCAA GCCGGAAGCC
AAGCCGGAAG CCAAGCCGGA AGCCAAGCCG GAAGCCAAGC CGGAAGCCAA GCCGGAAGCC
AAACCGGAAG CCAAGCCGGA AGCCAAGCCG GAAGCCAAGC CGGAAGCCAA GCCGGAAGCC
AAGCCGGAAG CCAAGCCGGA AGCCAAGCCG GAAGCCAAGC CGGAAGCCAA GCCGAAAGCC
AAACCGAAGG TCGAGTCGGA AGCCCAGTCA GAGGCTATGC CGGAAGCCAA GCCGAAAACA
ACCCGGCGCG CTCCGAGCAG AAGTCGGACC AAAACCAAAA CAAAAACCGA AACTGCGGAA
AGCAACACTT CGGCGACGGG TACCGAGACG GACACACCTT CTGAAAAGGA TGAAAAACCC
GCGGAAACCA AGCCGCCTGC AAAGCGTGCC CGAGCACGGC GTACCACCAA ACCGACGGCA
AAAACAGCGA CACAGGCCAG CGATGATGTT TCGCCCGCTG AAAAGGATGA AACCGCCAAA
GCAACTGAAA CTGCCGCACC GAAACGTCGG ACAAGGGCCA GAAAAACAAC AGCCAAAACC
GTAAAATCCG GCGACGACGC CAGCTCCGTA TCTGCCAGCA ATGCGGAGGA AGCTGAAAAG
AAAAAACCGA CCCGCCGGCC CCGTAAGCCG GCAGCGAAAG CGGTTGAAGA ATCCAAAAAG
GCTGAAACGT CCGAGGATTA A
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| Protein sequence | MTKKMLINAT HPEEHRVAIV EDGILSELDI EISGKEQTKG NIYKAVVARV ETGLQAAFVD
YGSERLGFLQ IGEIHPAFFK EAEGRVEAGK RPRINDILRR GQEILVQIVK EERGTKGAAL
TTYLSLPGRY MVLMPDSDTK GISRKIEKES DRKKLRELMD SLEIPEEMGY IVRTAGSTQK
RTDLKRDVDY LLRLFNKIQS LSDSTKAPSL IYKESNLVIR SIRDYFSDDM DEVLVDDAKV
STEARDFFQE VMPEYAELVK LHQERRPIFA RYQIEDQIES IGKNKVMLPS GGSIVIDSTE
ALVAIDVNSG KMASEQGVEA TAYKTNLEAA VETARQLRLR DLGGLVVIDF IDMRDRKHIR
DIEKTLKEAM KTDKARVTIG RISQFGLLEM SRQRIKSALA AASFEVCPHC NGSGKIKTIE
AQSLGFLRRI HTGLAKGRIG RVEATVPLDV ASYLLNNKRV ELMAIEQKND VSIHIKGCPD
YMNGQGEIDF HKREKEETQA TAYIEASQVM SETNNAQQDS TTDTEEKPAK RRRRPRRRRK
SSAATPVSEP STLTTESEEQ QPAATQDAAE SQPMATDTEV AREVSEKTAE PVSTEATEPA
EKTAEPASAA EEQPQKPSRP RSRSGRRKPA TKKTEAKPEA KPEAKPEAKP EAKPEAKPEA
KPEAKPEAKP EAKPEAKPEA KPEAKPEAKP EAKPEAKPEA KPEAKPEAKP EAKPEAKPEA
KPEAKPEAKP EAKPEAKPEA KPEAKPEAKP EAKPEAKPKA KPKVESEAQS EAMPEAKPKT
TRRAPSRSRT KTKTKTETAE SNTSATGTET DTPSEKDEKP AETKPPAKRA RARRTTKPTA
KTATQASDDV SPAEKDETAK ATETAAPKRR TRARKTTAKT VKSGDDASSV SASNAEEAEK
KKPTRRPRKP AAKAVEESKK AETSED
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