| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2013 |
|---|
| Symbol | |
|---|
| ID | 3724704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 2344281 |
|---|
| End bp | 2345444 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637751615 |
|---|
| Product | HD-superfamily hydrolase |
|---|
| Protein accession | YP_357424 |
|---|
| Protein GI | 77919609 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3481] Predicted HD-superfamily hydrolase |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.00000276986 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAAG TTTATGCGGG GCACATTAAG GATCGGGATA TAGTGAACGA CTCCTTTCTG
GTGCGCGAAA AAATAACCGC CATGGCGCGT AACGGCAAGC CCTATCTGAC CCTCAAGCTG
ATGGATCGTA GCGGCGAGGT GGAGGGGCGT GTCTGGGATC GTGTTGAAGA GTTTTCGGGT
TGTTTTGACA AGGATGATTT CATCGAGGTG CAGGGCAAGG CCAGTCTGTA TCTCGGTAAA
ATGCAGTTGG TTATTCAAAA GCTGAGAAAG GTCGATGATT CGCAGATCGA CCTGGGCGAT
TATCTGCCTG TTGCGACGCG TAGCATTGAG GACATGGTGG CGGAACTCAG GGATCAGGTT
GCGAGTTTGC AAACACCCTG TTTCAAAGAT CTGATGGAAC TTTTTCTGGC CGATGAAGCT
TTTATGCAGG GTTACACAAG CGCCCCGGCT GCCAAGGCCA TTCACCATGT CTATCTCGGG
GGGCTGCTCG ATCATTCCTT GTCGGTAGCT CGCCTGGTGG ACGATATTTG CCGTCATTAT
CCCACGGTCA ACCGCGACCT GTTGCTTACC GGCGCTTTGC TCCACGATAT CGGCAAGGTG
GCGGAGCTGT GCTATGAGCG CGCTTTTGGT TACACCGATG CGGGAAAGCT GCTCGGGCAC
ATTACCATCG GTTTTCAGAT GCTGGATAGC AAGTTGGCTG AAATTACCGA TTTCCCCGGC
GATTTGGCAC TGCTTCTGAA GCATCTGCTG TTGTCTCATC ACGGGCAGTA CGAATACGGT
TCGCCCAAGC GGCCGAAAAC CCTTGAAGCG ATTATTCTCA ATTATCTGGA CGATCTTGAT
TCCAAGATCA ACGGCATACA GACCCATATG GATAAAGATC CGGATAACGA GCAGACATGG
ACCGGTTATC ATCGCATCTA CGATCGCTAT TTTTACAAAA GCCCCAACGC TTCTGCCAGC
CGCGAATGCG ATGCGGCCTG CACATCTACG GCAGCATCGA CATCACCCTC CTCTCGCGAG
GTGCCAGCGG CAACCCAAAC CGTGCCGGCA AAGGAGCGAC GGCCTTCCGA AAAGCGCCGT
AAGGGATTGA ATTTCACTTT GGGGGACCAG TTGCGCGGGA AGAACCTGGA TCTCTTTGCA
TCGGAAGAAA AGGAAGAAAA GTGA
|
|---|
| Protein sequence | MKKVYAGHIK DRDIVNDSFL VREKITAMAR NGKPYLTLKL MDRSGEVEGR VWDRVEEFSG
CFDKDDFIEV QGKASLYLGK MQLVIQKLRK VDDSQIDLGD YLPVATRSIE DMVAELRDQV
ASLQTPCFKD LMELFLADEA FMQGYTSAPA AKAIHHVYLG GLLDHSLSVA RLVDDICRHY
PTVNRDLLLT GALLHDIGKV AELCYERAFG YTDAGKLLGH ITIGFQMLDS KLAEITDFPG
DLALLLKHLL LSHHGQYEYG SPKRPKTLEA IILNYLDDLD SKINGIQTHM DKDPDNEQTW
TGYHRIYDRY FYKSPNASAS RECDAACTST AASTSPSSRE VPAATQTVPA KERRPSEKRR
KGLNFTLGDQ LRGKNLDLFA SEEKEEK
|
|---|
| |