Gene Pcar_1915 details

Gene Information

• Locus tag: Pcar_1915
• Symbol: dxr
• ID: 3724605
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 2231374
• End bp: 2232558
• Gene Length: 1185 bp
• Protein Length: 394 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637751516
• Product: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• Protein accession: YP_357326
• Protein GI: 77919511
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• TIGRFAM ID: [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.000000153104
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTTCCG TTAAAAAACT CGGCATCCTC GGATCTACCG GTTCCATAGG TGTAAGTACT 
CTGGATATTG TTGCGGCTTT TCCCGAACAG TTCGAGGTCG TTACCCTTAC AGCCGGCAAC 
AATCTCGCTC GTCTGGAGGA GCAAATCCGC CGCTTCCGTC CCAAAATGGT GGCGGTAATA 
TCCGCGGACG GTGCGCAGCA GCTGAAAGAG CGCCTCGGCG CCGATGCTCC GCAGATCCTT 
TCCGGGGTCG AAGGGCTGGT GGCGTGCGCC TGTCATGAAG ATATAGACAT GGTTGTCTCC 
GCCATTGTCG GCGCGGCCGG CCTGGTTCCA ACCATGTCCG CCATCGAGAC AGGCAAGGAT 
ATTGCCCTGG CCAACAAGGA AACGTTGGTC ACGGCCGGTT CCCTGGTTAC GGAAGCGGTC 
GCTCGCCACG GTGTGCGGCT GTTCCCCGTG GACAGTGAAC ACTCCGCTAT CTTCCAATCG 
CTGGAAGGCC ATCGTATGGA TGATGTTCGG CGACTTATCC TGACAGCCTC GGGGGGGCCT 
TTTCGCAACC GGATGCTGGC GGATATGGCC AGTGTCACTC CGGCAGATGC CCTGGCTCAT 
CCGAACTGGA GCATGGGACG TAAAATCTCC ATCGATTCCG CCACCATGAT GAACAAGGGG 
CTCGAGGTTA TCGAGGCACG CTGGTTGTTC GATGTGCCGG CAGAGCGCAT TGCCGTGCAT 
ATCCATCCGC AGAGTATTGT GCATTCCTTG GTTGAGTATG TCGATGGTGC GGTAATTGCC 
CAGTTAGGTA TTCCCGATAT GAAAACCCCC ATTGCCTATG CCCTGTCTCA CCCCACTCGT 
CTGCCTCTGG ATCTGCCGCC GCTCGATCTT TGCAGTATGC GCAATCTCAC TTTCGACGAA 
CCGGATCTGG AGAGATTTCC ATGTCTGGCC CTGGCCTATG AAGCTCTGGC GATGGGGGGC 
ACCGCTCCGG CCGTACTTAA TGCCGCCAAC GAAATCGCTG TCGATGCTTT TCTCAATGAA 
GAAATTGCCT TCCTCGATAT CGCCCGGGTG ATACGCGCCG CATTGCAGGG CCTGGAGGTC 
AAGCCGCTGG AACATATCGA CCAGGTTCTG CGCGCCGATC TTTGGGGTCG CAAGGAAGCC 
CGCCGCTTTA TCGATGCCAG GGGCGAAGGA GCGACGGTAT GCTGA 

 

Protein sequence

MASVKKLGIL GSTGSIGVST LDIVAAFPEQ FEVVTLTAGN NLARLEEQIR RFRPKMVAVI 
SADGAQQLKE RLGADAPQIL SGVEGLVACA CHEDIDMVVS AIVGAAGLVP TMSAIETGKD 
IALANKETLV TAGSLVTEAV ARHGVRLFPV DSEHSAIFQS LEGHRMDDVR RLILTASGGP 
FRNRMLADMA SVTPADALAH PNWSMGRKIS IDSATMMNKG LEVIEARWLF DVPAERIAVH 
IHPQSIVHSL VEYVDGAVIA QLGIPDMKTP IAYALSHPTR LPLDLPPLDL CSMRNLTFDE 
PDLERFPCLA LAYEALAMGG TAPAVLNAAN EIAVDAFLNE EIAFLDIARV IRAALQGLEV 
KPLEHIDQVL RADLWGRKEA RRFIDARGEG ATVC