| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1882 |
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| Symbol | rpsA |
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| ID | 3724572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 2195202 |
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| End bp | 2196923 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637751483 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_357293 |
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| Protein GI | 77919478 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 6.48438e-16 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTAGAAG CTAAGGAAAA CAACAACACT GATGAATTCA TGGATGATGA ATTCGAAGAC
ATGGAACAGA GCTTTAGTGA GCTTTTTGAA AACAGCATCA AGGAGCTGAA CGTCGGCGAT
GTCGTCGAAG GCACTGTTCT GCAGATCAAC GGTGACATGG TTGTCGTTGA TGTCGGGTAC
AAGTCCGAGG GTATTATCCC GCTGGCCGAA TTCGCTGATG AAAGCGGTCA GGTGGACATC
AAGGTCGGAG ACAAAATCGA TGTGCTGTTC GAGCGCCGTG AAAACGAAAA CGGCCTGATC
AGTCTGTCGA AGGAGAAAGC CGATCGGCAG AAGATCTGGA ACAGCCTGGA AGAAGACGCT
GTTGTCGAAG GACGTATCGC GGCCCGTATC AAGGGCGGTC TGTCCGTAGA CATCGGTGTC
AACGCCTTCC TGCCCGGTTC CCAGGTCGAT CTGCGCCCTG TCCGCAACCT GGATAAGCTG
CTTGGTGAAA CCTTCGAGTT CAAGATCATC AAGCTCAATA AGCGTCGCGG TAATATCGTG
CTGTCGCGTC GGGTACTGCT GGAAGAACAG CGTGAGTCCC TGCGTCAGGA CACCCTTGAG
ACGCTGGCGG AAGATCAGGA AGTCGTCGGT GTGGTTAAAA ATCTCACCGA TTACGGCGCA
TTTATCGATC TTGGCGGCAT TGACGGTCTG TTGCATATTA CCGATATGTC CTGGGGTCGC
GTCGCGCATC CTTCCGATGT GCTTGCCGTC GGCGACAAGA TCAAAGTCAA GGTTCTCAAG
TTCGATCGCG AAAAAGAGCG TGTTTCCCTT GGCCTCAAAC AGCTTACCGC CGATCCCTGG
TTGAGCGTGG CTGAAAAATA TCCTACCGGT AACAGGGTTT CCGGTAAGGT GGTCAGCCTG
ACCGATTATG GTGCATTCGT TGAATTGGAT GAAGGCGTTG AAGGCCTGAT TCACGTCAGC
GAAATGAGCT GGACCAAGCG TATCAAACAT CCCAGCAAGA TCCTCAATAT CGGCGACGAT
ATTGAATCGG TTGTGCTGGC TGTCGATGTG TCCAATCGTC GTATCTCCCT TGGTCTCAAG
CAGATCGAGC GTAATCCCTG GGAAGTTATC GGCGAGAAGT TCCCCATCGG AACCATTATC
GAAGGTCAGG TCAAGAATAT CACCGACTTC GGTATTTTTG TCGGCGTTGA CGACGGCATT
GACGGTCTGG TGCATATCTC GGATCTTTCC TGGACCAAGC GCATCAAGCA TCCTTCCGAG
TTGTTCAAAA AGGGTGATGT GGTCAAGGCT GTTGTGCTGA ATATCGATCA GGAGAACGAA
CGTTTCTCTC TCGGTATCAA ACAACTCGCT TCCGATCCCT GGCAGACCAT CGCCACCCGC
TATGCGCCGG GTACCATGAT CAGCGGCAAG GTCACCTCCG TAACCGATTT CGGTATTTTC
CTCGAAGTCG AGGAAGGGAT CGAAGGCCTG ATTCACGTGT CCGAAATCAG CAAGGAAAAG
GTCGATTCGC CGAAGGATTT CGCTAAAGTC GGCGATAACC TCGAGGCCGT TGTGCTGCAT
GTGGACACCG AAGACAAGAA GATCGCCCTG TCTATCAAAC ATGTTGCGCA CCAGAAGGAA
AAGGCTGAAG TCGATGCCTT CCTCGGTTCG CAAAAAAGCG CTACCTCCAA TCTTGGGGAC
ATTTTCAAAG GCGCCATGGA CAAGGCCGGC GATAAAGAAT AA
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| Protein sequence | MVEAKENNNT DEFMDDEFED MEQSFSELFE NSIKELNVGD VVEGTVLQIN GDMVVVDVGY
KSEGIIPLAE FADESGQVDI KVGDKIDVLF ERRENENGLI SLSKEKADRQ KIWNSLEEDA
VVEGRIAARI KGGLSVDIGV NAFLPGSQVD LRPVRNLDKL LGETFEFKII KLNKRRGNIV
LSRRVLLEEQ RESLRQDTLE TLAEDQEVVG VVKNLTDYGA FIDLGGIDGL LHITDMSWGR
VAHPSDVLAV GDKIKVKVLK FDREKERVSL GLKQLTADPW LSVAEKYPTG NRVSGKVVSL
TDYGAFVELD EGVEGLIHVS EMSWTKRIKH PSKILNIGDD IESVVLAVDV SNRRISLGLK
QIERNPWEVI GEKFPIGTII EGQVKNITDF GIFVGVDDGI DGLVHISDLS WTKRIKHPSE
LFKKGDVVKA VVLNIDQENE RFSLGIKQLA SDPWQTIATR YAPGTMISGK VTSVTDFGIF
LEVEEGIEGL IHVSEISKEK VDSPKDFAKV GDNLEAVVLH VDTEDKKIAL SIKHVAHQKE
KAEVDAFLGS QKSATSNLGD IFKGAMDKAG DKE
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