Gene Pcar_1858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_1858 
SymboltrmU 
ID3724548 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand- 
Start bp2173377 
End bp2174435 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content59% 
IMG OID637751459 
ProducttRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 
Protein accessionYP_357269 
Protein GI77919454 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.000000793578 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGAGA AGAACAAGCA TATCTTGGTC GCTATGAGTG GCGGTGTCGA TTCCACAGTA 
GCCGCGGCCC TGCTTTTGGC GCAGGGGCAT CAGGTCTCCG GGGTGACCAT GCGGGTCTGG 
GATACCGAGC CCCTTGGCGA TGGCCGGGAG CCTGCTCATA TACGTGATGC GCGCAAGGTT 
GCATTCGACC TGGGGATACC TTTGCATGTC GTCGATTTGC GCGAGGAGTT TCTGCAGCAG 
GTGGTCACCC CTTTTTGCGA GGAGTATTTA TCCGGACGCA CCCCCAATCC CTGTGTGCTG 
TGCAATCGGG TCTTTAAATT CAGCCGATTG TTACGGGAGG CCGACCGTCT TGGCGCCGAC 
GCCCTGGCGA CCGGCCACTA TGCCCGCATT GTCGAGCATG ACGGCCTGAA GGTTTTGGCC 
AAAGGGAGCA ACCGGCAAAA GGACCAGAGC TATTTTCTCT TTACCCTGAC ACAGCAGCAG 
TTGCAGCGGG TGGTTTTCCC TCTTGGAGAA ATGAGCAAAG AGGAGGTGCG TACGCATGCT 
GAGCGTCTCG GCCTTCATGT GGCGCAAAAG GGCGACAGTC AGGATATCTG TTTCATTCCG 
GATGGGGATT ATATCGGCTT TCTGGAACGT CAGTCCCATG CCACAGATAC CGAAGGTTCC 
ATAGTGCATG TGTCCGGCAA GCGGCTGGGC AAACACCGTG GCGCCTATCG GTTTACCGTC 
GGTCAGCGGC GGGGTCTGGG TATCGCCTGG CCGGAACCCC TGTATGTCGT TGCTATCGAC 
GCGGCCAAAA AACAGGTGAT TGTCGGTGAG AAGGAACACC TGCACGTCGA CCGGTTGGTC 
ACCACCGGGA CCAACTGGAT CGTCGCGCAG CCGCAGCAAC CGTTGCAGGC CCGGTGTCGC 
ATCCGGTACC GTCATCAGGA AGCGCCGTGT ACGCTGGTTG TGCTTGGCAA CGACCGGGTG 
GAGGTGCGTT TCGATGAGCC GCAAAGCGGC GTCAGTCCCG GACAGGCGGC GGTTTTTTAC 
GATGAAGACC GGGTATTGGG TGGGGGCTGG ATTGCATGA
 
Protein sequence
MKEKNKHILV AMSGGVDSTV AAALLLAQGH QVSGVTMRVW DTEPLGDGRE PAHIRDARKV 
AFDLGIPLHV VDLREEFLQQ VVTPFCEEYL SGRTPNPCVL CNRVFKFSRL LREADRLGAD 
ALATGHYARI VEHDGLKVLA KGSNRQKDQS YFLFTLTQQQ LQRVVFPLGE MSKEEVRTHA 
ERLGLHVAQK GDSQDICFIP DGDYIGFLER QSHATDTEGS IVHVSGKRLG KHRGAYRFTV 
GQRRGLGIAW PEPLYVVAID AAKKQVIVGE KEHLHVDRLV TTGTNWIVAQ PQQPLQARCR 
IRYRHQEAPC TLVVLGNDRV EVRFDEPQSG VSPGQAAVFY DEDRVLGGGW IA