| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1516 |
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| Symbol | |
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| ID | 3724215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 1774859 |
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| End bp | 1777954 |
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| Gene Length | 3096 bp |
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| Protein Length | 1031 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637751112 |
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| Product | pectate lyase protein |
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| Protein accession | YP_356932 |
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| Protein GI | 77919117 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000000206035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAAGAA AATCCTTACT AAAAAATCTA TCTACCATGG GAGGGCTGAT TTGTGTGCTG
TTGCTTGTCA TGCAAATGGC TATTCCCGCA AGAGCTGCGG CAGCAACCGG AAGCTTTGAG
TTCGATGCAA GCAGTTACTC TGTCGATGAA GGCGCCGGTC AGGCCAATGT TCTTTTGAAG
CGTGTCGGTG GCGCGTCCGG TTCAGCAACC GTTCAGGTAC GTACTCTGTC GGATACTACC
GATTGGAAAA CCGATTACGA GAGTTTCTCC TGGACCACAG TCAGCTTTGC CGATGGCCAG
ACCCAAAAAA CCGTCAGCGT TGTCATTAAC GATGATGCGG AGCAGGAATC CAGCGAAACG
TTGAATGTTT TGTTGCGAAA ACCCAGCGAC GGAACGACGC TCGGCACCGT TACCAGTACT
GCGGTAACCA TTGTCGATAA CGACTCCTTG CCCGGCAGTT TCGAATTTGC GCAGGCCGGC
TATTCTGTTG CTGAAGACGG CGGCACGGTC GATGTTTTGC TGAAGCGGGT TGGCGGTACT
TCCGGTGCGG CTACCGTCGG GGTGCGTACC ATGGGGGTGA CGGCTGATTA TGCCACTGAC
TACAGCAGTT TTTCCTGGAC CACGGTGAAT TTTGCCGATG GCGAAACCCA GAAGCCTATC
AGCATTGCCG TTACCGACGA TGCAGCGGTG GAAGACAACG AAACTTTTAC CGTGTTGTTG
CAGAATCCCA CCGGTGGCAC CAGTCTCGGT TCTGTGACCG AAGCCACCGT AACCATTGTT
GACAACGACG AAGCAGAGGC TCCTGTCTCC ACGGAGCCGG GTAGTTTCGA GTTTGCGGCG
GCCGGTTACT CTGTCGCTGA AGACGGCGGC ACGGTCGATG TTCTGCTGAA GCGGGTTGGC
GGTACTTCCG GTGCGGCTAC CGTCGAGGTG CGCACCCTGG GCGTGACGGC CGATTACGCC
ACTGACTACA GCAGTTTTTC CTGGACCACG GTAAATTTTG CCGATGGCGA AACCCAGAAG
CCTATCAGCA TTGCCGTTAC CGACGATGCA GCGGTGGAAG ACAACGAAAC TTTTACCGTG
TTGTTGCAGA ATCCCACCGG TGGTACCAGT CTCGGTTCCG TGACCGAATC CACCGTAACT
ATCGTCGATA ACGACGAAGC GGCGGTTGGC GATACCACAG CACCGGTTGC AGCCATTACC
ACACCTTTGT CGGGCCTTGA AGTGACCAGC GCTCAGACTT TGACCATCGT GGCCGAAGCC
AGTGACAATG TTGCCGTCAG TAAGGTTGAA TTTTATGACG GAAGCAACTT GATTGGGACC
GATACCACCA ATACTTACTC GGCTTCATTG GATGTTAGCG AAACCGATAA CGGTACGCAT
AATCTTACCG TTGTTGCCTA TGACGAAGCG GGCAATCAGA CCACGTCTTC GCCTGTAACG
GTAACCGTCA ATATTGCCTC CGCCTCCACG GAGCCGGGTA GTTTTGAATT TTCGGCAGCC
GCTTATTCCG TCGATGAAGA TGGCGGCACG GTTGATGTAC TGCTGAAGCG GGTCGGCGGT
ACTTCCGGCG CAGCCGCCGT CGAGGTGCGT ACCCTGGGTG TGACGGCCGA TTACGCTACC
GACTACAGCA GTTTTTCCTG GACCGTGGTG AACTTCGCCG ACGGCGAAAG CCAGAAGACC
ATCAGTATCG GCATTACCGA CGATGCTTTG GCGGAAAATG ACGAAACCTT TACCGTATTG
ATGCAGAATC CCACCGGCGG AACGACCTTG GGGGCGGTGA CCGAATCGAC CGTAACCATT
GTGGATAACG ATATCGATTC CGGCACGACC GTGAATCCGG ATCTGGGTTA TTTGCCGACT
TTCCCGGGTG CCGAGGGCTA TGGTACCGAA ACGGGTGGCG GCCGAGGCGG TCAGATCATC
AAGGTCACCA ATCTTAACGA CAGCGGTACG GGATCTTTGC GTGCCGCCAT ACAGGCCAGC
GGCGCTCGAA TCGTGGTGTT TGAAGTCTCC GGCATTATTG AGCTGCAGAG CGAGCTGATC
ATTACCAACC CCTATATCAC CATCGCCGGT CAGACCGCTC CGGCTCCGGG CATCATGTTG
AAAAACCGGC GGCTTAAAGT ATCCGCCCAT GATGTGGTGA TTCAGCATAT CCGCGTACGT
CCGGGCGATG AGCGCTCCTA CAACACTTCC GAAGAAGGGG AACGGGATTG CCTGGGGATC
GTCGGTCATT CGGATATCTA CAACGTTGTG GTTGACCATT GCTCCTTTCA GTGGGCGGTC
GACGAGGTCA TCGGGCTGTG GGGATATAGC AACAGTCGAC TGGACAACAT CACCATTTCC
AACTGCATTG TCAGCGAAGG TCTGGATAAC TCGATTCACC CGGAAGGCGC CCACTCCAAA
GGGTTCCTTA TCGGTGACTA TGCCAAGAAG GTAACCGTAC TGCGCAACCT GATTTCTTCA
AGCGACGACC GCAACGGCCC GAACGCCAAG GGTGGCACCA CCTCGGTGGT GATTAATAAC
TACGTGTACA ATGCCGGCCG CAGCGGTCGC ATGCACTACA GCGATTCCTA CAATGCCGGG
ACCCTGTTTC AATCGACCGT CGGCAATGTT TTCCGGGATG GTCCGGAGTA TGCGACCCAG
GCTCCGCTGT GGTGGGCCGA CAATACCAAG TCCGGTTCGC AAGTCTACGC CTCGGATAAC
CTCATACAGC GGCTTGACGA GTCGGTGGCT TCCGTACCGC TGATGGATCC TCCGTCCTGG
GGCAATCCGC AGGTGTCGAC GCCGCCGGTG CCCTACGACA ACGTCACCAT CCTTCCGACG
AGCAGTGTCA AAAGCTACGT ATTGCAGAAC TGCGGAGCGC GACCTGCCGA GCGTGGAACG
AGTGCCGGCG ACAGTCTCGA CGAGCGGGTC ATAAATGACG TCTGGAACGG CAGCGGGGCC
ATGATCGACA CCCCTGCCCA GGGCGGCGGT TGGCCGACAT ATGCTAAGAA CACCCGGCAG
TTTGTCGCGC CTGCCAATCC CAACGGCGAC GACGACGGAG ACGGCTACAC CAATATCGAG
GAAGTATTGC ATCAGATGGC TGCCGCTGTC GAATAA
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| Protein sequence | MRRKSLLKNL STMGGLICVL LLVMQMAIPA RAAAATGSFE FDASSYSVDE GAGQANVLLK
RVGGASGSAT VQVRTLSDTT DWKTDYESFS WTTVSFADGQ TQKTVSVVIN DDAEQESSET
LNVLLRKPSD GTTLGTVTST AVTIVDNDSL PGSFEFAQAG YSVAEDGGTV DVLLKRVGGT
SGAATVGVRT MGVTADYATD YSSFSWTTVN FADGETQKPI SIAVTDDAAV EDNETFTVLL
QNPTGGTSLG SVTEATVTIV DNDEAEAPVS TEPGSFEFAA AGYSVAEDGG TVDVLLKRVG
GTSGAATVEV RTLGVTADYA TDYSSFSWTT VNFADGETQK PISIAVTDDA AVEDNETFTV
LLQNPTGGTS LGSVTESTVT IVDNDEAAVG DTTAPVAAIT TPLSGLEVTS AQTLTIVAEA
SDNVAVSKVE FYDGSNLIGT DTTNTYSASL DVSETDNGTH NLTVVAYDEA GNQTTSSPVT
VTVNIASAST EPGSFEFSAA AYSVDEDGGT VDVLLKRVGG TSGAAAVEVR TLGVTADYAT
DYSSFSWTVV NFADGESQKT ISIGITDDAL AENDETFTVL MQNPTGGTTL GAVTESTVTI
VDNDIDSGTT VNPDLGYLPT FPGAEGYGTE TGGGRGGQII KVTNLNDSGT GSLRAAIQAS
GARIVVFEVS GIIELQSELI ITNPYITIAG QTAPAPGIML KNRRLKVSAH DVVIQHIRVR
PGDERSYNTS EEGERDCLGI VGHSDIYNVV VDHCSFQWAV DEVIGLWGYS NSRLDNITIS
NCIVSEGLDN SIHPEGAHSK GFLIGDYAKK VTVLRNLISS SDDRNGPNAK GGTTSVVINN
YVYNAGRSGR MHYSDSYNAG TLFQSTVGNV FRDGPEYATQ APLWWADNTK SGSQVYASDN
LIQRLDESVA SVPLMDPPSW GNPQVSTPPV PYDNVTILPT SSVKSYVLQN CGARPAERGT
SAGDSLDERV INDVWNGSGA MIDTPAQGGG WPTYAKNTRQ FVAPANPNGD DDGDGYTNIE
EVLHQMAAAV E
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