Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_1513 |
Symbol | xerD |
ID | 3723777 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | + |
Start bp | 1771571 |
End bp | 1772458 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637751109 |
Product | site-specific recombinase |
Protein accession | YP_356929 |
Protein GI | 77919114 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 0.110584 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCAAT ATCTCGACCT TTTTCTTAAT TATCTGGTGG TCGAAAAAGG CCTCTCCGCC AATACCCTGG ATGCCTACGG GCGCGACCTT GCCCGATATC TGGAATTTCT CTCTGTCAAG GGGGTAACAG GCTTGGAGCA GGTCAGCCCG CCCATGGTGG TGGCCTTTTT GTCGGCTCTC AAGGAACGGG GGCTGTCGGC TCGCAGTCGC GCCCGCAAAC TGGTTTCGTT GCGTATGTTT CATCGTTTTT TGCTGGCCGA GAATCTGGCA ACGACCAATC CCGCTGCGCA GGTGGCGGCA CCCAAAAGCT TTGCCAAGTT ACCGCAAATA TTGACGCCTG ACGAGGTTGA AAGCCTTCTC AGCGCCCCTG GCAATACCAC CTGTTTTGAT TTGCGTGACA AGGCCATGCT GGAAATTCTC TATGCCACAG GCCTGCGGGT GTCGGAACTG GTAGGACTTA CCTTGCAGGA TTTACAGCTC GATGTCGGTT ATCTCACGGC CTTCGGCAAG CGCGCCAAGC AGCGTATCGT GCCTTTGGGA GATGCCGCCA GAGAGGCTGT TCTTGAGTAT TTATCCCATG GCCGTGGCGA GTTGGCGGGC GAGGTCGGTT CGGGGTTTTT GTTTTTGAAT CGTTCAGGTA ACGGGTTGAC ACGACAGGGG TTCTGGAAGA TGATGAAGCG CAGAGCGATG GAGGCGGGCA TCAATAAAAA TATTACGCCT CACACTTTGC GACATTCATT TGCTACCCAC CTGCTGGATA ACGGCGCCGA CCTGCGTGCC GTCCAGGCGA TGCTGGGGCA TGCGGATATT TCCACCACCC AGATTTATAC CCATGTAACC AGAGAGCGAA TGAAGGTTAT TCACCAACAG CATCACCCGC GTGGGTGA
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Protein sequence | MDQYLDLFLN YLVVEKGLSA NTLDAYGRDL ARYLEFLSVK GVTGLEQVSP PMVVAFLSAL KERGLSARSR ARKLVSLRMF HRFLLAENLA TTNPAAQVAA PKSFAKLPQI LTPDEVESLL SAPGNTTCFD LRDKAMLEIL YATGLRVSEL VGLTLQDLQL DVGYLTAFGK RAKQRIVPLG DAAREAVLEY LSHGRGELAG EVGSGFLFLN RSGNGLTRQG FWKMMKRRAM EAGINKNITP HTLRHSFATH LLDNGADLRA VQAMLGHADI STTQIYTHVT RERMKVIHQQ HHPRG
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