Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_1343 |
Symbol | |
ID | 3723536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | + |
Start bp | 1569820 |
End bp | 1573644 |
Gene Length | 3825 bp |
Protein Length | 1274 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637750935 |
Product | EAL and GGDEF domain-containing protein |
Protein accession | YP_356762 |
Protein GI | 77918947 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGTTTCAG CTCAACTCAA TATACTGCTT GTTGAAAACG ACCCATCTTA TGCCGATGCT ATTCGCAATG TATTTTTGGC TACATGCCCA TCTTGGAATG TTAAGCAGGT AGACACGCTA CAGAAGTCTC ATCTGCTTAT GGCTGGTGAA GTCCCTGATT TGGTTTTAAT AGCCATCGAT CTGCACGATG AAAACGCCAT CGAAACCTTA ACACTTCCCC CCGAAGACGC CCCTTGTCCT ATCATTGTAA TGGCGACAAA AGTCAAGGAA GACGCAGCAA TGGAAGTCTT GAAGGCCGGG GCGATGGATT TTATTGTGAA ATCTCCCGAA GCTATTCGGG AACTGCCGCA CAGGGTGGCC CGTGTTCTGG ATCATTGGCG CGTCAGGCAA GATAATACTC TTCTTGAGAT GGAACTTTGC CAAGCCAACC TGATTGTAGA CAACAGCCCG GCAGTGCTAT TTCATTGGAA AGCGGAAGAC GGTTGGCCGA TAGTTTCTGT ATCGAAAAAT ATTTCTCAAT TCGGCTATGC GCAGGAAGAG CTCATGTCTG GCGATTTTTC CTATGCAACG CTGGTTCACC CGAAGGATCT TGATCGACTA GAAGAGGAAT TGCAGGCGCA AATTAATCGC GGCGAGAGGA TATTTCAGAC GGAATACCGG ATAATCACCA AGCAGAAAGA GGTCCGTTGG GTCGATGAAA GAACCTTTGT GGAACGAGAT GCTGCTGGGA AAGTCAGCCA CTACCAAGGG TTCATTATCG ATATCGATGA ACGCAAGCGG ACCGAGTTGG TCATGGCGGC ACGTATGCGT CTCCTGCAAC TTGCAACCAA CAACACCCTC GCCCAACTTC TGGAAGCTAC GCTGGATGAG GCCGAGGCGT TGACCGAAAG CCGAATGGGG TTCTATCACT TCCTCGAAGA TGACCAGAAA ACCCTTTCTC TACAAGCTTG GTCTAGAAGA ACAAAAAGTG ATTTCTGCAA CATAGAAGGG GCGGGCCTGC ACTACCCATT GGAAAAGGCC GGTGTCTGGG TCGATTGCAT TCGCGAGCGA AGAGCGGTAT TCCACAACGA CTATGCCTCG CTTCCCCACG CCAATGGATT GCCAAAGGGA CACCCTCCGA TAGTACGGGA ATTGGTCGTG CCGGTATTTC GAGGTGAGAA AATTGTGGCT GTTCTTGGGA TGGCGAACAA AGCAGAAGCT TATACGCAAA GAGATGCGGA GGCAGCCTCC CTTCTGGCCG ATTTTGCCTG GACCACTTTA GAGAGAAAGC TTACCGAGGA ATCCCTCCAG GTCTCCGAAC AGAAATACCG CCATATTGTC GATCATGCTC CTTTCGGAAT TACTCGCACC ACCAGGGATG GCAAGCTAAT CAGCGCCAAC CCGGCCATGG CCAATATCCT GAAATACGAT TCTTCCCAAG AGCTTTTAGA GACCATTGGT CGCTCCAGCC TTCAGGAGGT AATTTTTTCC AATCCTGCAG ACCGGGAAGA TATGGTGGAT AAAGTTATCA TCAGCAATTC CTGGTGCCTC CATAACCTGA GCCTGCGTTG CAAAGATGGT AGTTTGGCAA CCTGCAGAGT GCACTCCCGA CGATTGTCGG AAAAGGGTAG TCAGAATTGG GAATACGAAA ACTTTTTAGA GGACATTACT GAGCAGCTGG AAACGCAGCA GACTCTTCAG AAGAACAAAA AGAATATCCA ACAACTAGCC GAAAACACCG AAGCGGTGCT TTACGAATAT AACCTTAGCG ATAATAAATG GACTTACATG GCCCCCCAGG TTGAACGCAT TTTCGGGTAT AAACCCGAAG ATTGGATAGA CAACCAGTTT TGGCTGGATC GAGTCCACGA AGCCGACTGG GGAAAAGCGT CACGCGAAGA ACTGTCAAAA TTGAATCAGC AAGAGGCTCA TTCTATTGAG TATCGATTTT ATAAAAAAGA CGGCAGCATT GTCTGGGTGA GAGACATTAT TAGGATAGAA AGCGATGCCG AAAACAAACT GTGTTTGCAC GGCTTACTAA TCGACATCAC TGATAGCAAA CAATCGGAAA GCCAGCTAAA AAAGCTAAGT CGAGCTATTG AGCAAAGCCC TGTTTCAGTT GTTATCACTG ACCCTGAAGG TAGAATCGAA TATGTGAATC CCAAATTCAC GCAGCTCACC GGGTATACTC TGGAGGAGGT TATCGCTCAG AATCCGCGTA TACTGAAGTC GGGGAATCTC TTGCCGTCTG TCTACGATTC CCTTTGGAAA ACTATCACCT CCGGAAAGGA ATGGTACGGT GAGCTAGAAA ACAAGCGTAA AGATGGCAGT ATCTTTTGGG AGAGCGCCTC CATCTCCCCA CTCTTTGACG AATCGGGAAA GATCATTAAT TTCATTGGAG TTAAAGAGGA TATCACCCAG CGAAAGCTGA ACGAAAAACG CCTGGAATAT ATGGCGACTC ACGACGGGCT GACCGGCTTG GCCAACCGGA CTCTGCTCTA TGATCATCTA GAGATCGCCC TTCATCAATC ACAACGATCC AAAAAGCTGG TAGCGGTAAT TCTTTTAGAT CTAGACCGTT TCAAAGTGAT CAACGACAGC CTAGGTCACT TAGTGGGGGA TCAAGTTTTG AAGGCTGTTG GCCAACGGCT GAAGCAATAC GTTCGCAGCA CCGATACAGT GGCCAGACTT GGTGGAGACG AATTTGTGGT GCTGCTGACT GATGTCAGGG ACACAACCGC GGCGGGGAAG ATCGCCCATA ACCTGTTGAG GAAACTGAAT GAACCTTTTT TTCTCCATGG GCGCGAGCTT TACGTTAGTG CCAGCTTTGG TATCTGTCTT TCGGAAACCG ACAACGTCGA CGGTACCATA CTGCTTCGTA ATGCCGATAT AGCGATGTAT AAGGCAAAGG CGGAAGGTTG CGGGCTATAT TTTTATTCTC ACGAAATGAA CGAACATCTT ATTAAGACCC TTGAGATGGA AAATAGCTTG CGACAAGCTT TGGAAAAAAA CGAATTCCAA TTGTATTACC AGCCAAAAGT GGAACATGCA ACCGGCCGAA TAATCGGATG TGAGGCACTT TTGCGCTGGA GGCATCCGCA GAGGGGAATG ATTCCACCTA GTGAATTCAT CCCGCTTGCC GAAGAAACAG GCTTAATTGT GCAAATCGGT CATTGGGTGC TAGCAGAGGC CTGCCGTCAG TCCAAGATTT GGGAGACAGA GGGGCTGCCG CCACTGACCA TGGCCGTCAA TATCTCGGCC CGACAGTTTT ATCAGGGAGA GAACCTCATC CAGGCGGTCA AGTCAACTCT GGAGCGTTCT CAACTGGTCC CCTCGCAACT GGAGTTGGAG CTCACTGAAA GCATGGTCAT GAAAGATGCC GTCAATGCCG AGCGAACCAT GCGCAAAATA AAACAACTTG GGGTCAGTCT AAGCTTGGAT GATTTTGGCA CAGGCTATTC AAGTTTAAAC TACCTTCGCA GTTTCCCCGT GGATTCTCTT AAAATCGACC GCTCATTCAT TTTGGACATT GCCAGCGACG CCAGCAGCGC CGCAATCCTC AATAGCATCA TCGCTATCGC CCACACTCTG GGTTTGCAAA CCGTAGCTGA AGGCGTTGAA AACAACGATC AACTTGCCCT GGTAGCCAAT TGCGGTTGTA ATTATATTCA GGGATATCTT TTCAGCCGCC CTTTGCCACC TGAAGACTTT GTCGCTCTTT TTCTGGCCAA TAAAGGGAAG ATTGCCACCC CCGAACAAAT CTCCTTATGC AAAAATTCTC AGAACACTAA CTACTTAAAG CAAGACAAAA TGAATGCTAT CCCAATAACA TGCCCTCCTT GGTAG
|
Protein sequence | MVSAQLNILL VENDPSYADA IRNVFLATCP SWNVKQVDTL QKSHLLMAGE VPDLVLIAID LHDENAIETL TLPPEDAPCP IIVMATKVKE DAAMEVLKAG AMDFIVKSPE AIRELPHRVA RVLDHWRVRQ DNTLLEMELC QANLIVDNSP AVLFHWKAED GWPIVSVSKN ISQFGYAQEE LMSGDFSYAT LVHPKDLDRL EEELQAQINR GERIFQTEYR IITKQKEVRW VDERTFVERD AAGKVSHYQG FIIDIDERKR TELVMAARMR LLQLATNNTL AQLLEATLDE AEALTESRMG FYHFLEDDQK TLSLQAWSRR TKSDFCNIEG AGLHYPLEKA GVWVDCIRER RAVFHNDYAS LPHANGLPKG HPPIVRELVV PVFRGEKIVA VLGMANKAEA YTQRDAEAAS LLADFAWTTL ERKLTEESLQ VSEQKYRHIV DHAPFGITRT TRDGKLISAN PAMANILKYD SSQELLETIG RSSLQEVIFS NPADREDMVD KVIISNSWCL HNLSLRCKDG SLATCRVHSR RLSEKGSQNW EYENFLEDIT EQLETQQTLQ KNKKNIQQLA ENTEAVLYEY NLSDNKWTYM APQVERIFGY KPEDWIDNQF WLDRVHEADW GKASREELSK LNQQEAHSIE YRFYKKDGSI VWVRDIIRIE SDAENKLCLH GLLIDITDSK QSESQLKKLS RAIEQSPVSV VITDPEGRIE YVNPKFTQLT GYTLEEVIAQ NPRILKSGNL LPSVYDSLWK TITSGKEWYG ELENKRKDGS IFWESASISP LFDESGKIIN FIGVKEDITQ RKLNEKRLEY MATHDGLTGL ANRTLLYDHL EIALHQSQRS KKLVAVILLD LDRFKVINDS LGHLVGDQVL KAVGQRLKQY VRSTDTVARL GGDEFVVLLT DVRDTTAAGK IAHNLLRKLN EPFFLHGREL YVSASFGICL SETDNVDGTI LLRNADIAMY KAKAEGCGLY FYSHEMNEHL IKTLEMENSL RQALEKNEFQ LYYQPKVEHA TGRIIGCEAL LRWRHPQRGM IPPSEFIPLA EETGLIVQIG HWVLAEACRQ SKIWETEGLP PLTMAVNISA RQFYQGENLI QAVKSTLERS QLVPSQLELE LTESMVMKDA VNAERTMRKI KQLGVSLSLD DFGTGYSSLN YLRSFPVDSL KIDRSFILDI ASDASSAAIL NSIIAIAHTL GLQTVAEGVE NNDQLALVAN CGCNYIQGYL FSRPLPPEDF VALFLANKGK IATPEQISLC KNSQNTNYLK QDKMNAIPIT CPPW
|
| |