Gene Pcar_1343 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_1343 
Symbol 
ID3723536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp1569820 
End bp1573644 
Gene Length3825 bp 
Protein Length1274 aa 
Translation table11 
GC content48% 
IMG OID637750935 
ProductEAL and GGDEF domain-containing protein 
Protein accessionYP_356762 
Protein GI77918947 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTTCAG CTCAACTCAA TATACTGCTT GTTGAAAACG ACCCATCTTA TGCCGATGCT 
ATTCGCAATG TATTTTTGGC TACATGCCCA TCTTGGAATG TTAAGCAGGT AGACACGCTA
CAGAAGTCTC ATCTGCTTAT GGCTGGTGAA GTCCCTGATT TGGTTTTAAT AGCCATCGAT
CTGCACGATG AAAACGCCAT CGAAACCTTA ACACTTCCCC CCGAAGACGC CCCTTGTCCT
ATCATTGTAA TGGCGACAAA AGTCAAGGAA GACGCAGCAA TGGAAGTCTT GAAGGCCGGG
GCGATGGATT TTATTGTGAA ATCTCCCGAA GCTATTCGGG AACTGCCGCA CAGGGTGGCC
CGTGTTCTGG ATCATTGGCG CGTCAGGCAA GATAATACTC TTCTTGAGAT GGAACTTTGC
CAAGCCAACC TGATTGTAGA CAACAGCCCG GCAGTGCTAT TTCATTGGAA AGCGGAAGAC
GGTTGGCCGA TAGTTTCTGT ATCGAAAAAT ATTTCTCAAT TCGGCTATGC GCAGGAAGAG
CTCATGTCTG GCGATTTTTC CTATGCAACG CTGGTTCACC CGAAGGATCT TGATCGACTA
GAAGAGGAAT TGCAGGCGCA AATTAATCGC GGCGAGAGGA TATTTCAGAC GGAATACCGG
ATAATCACCA AGCAGAAAGA GGTCCGTTGG GTCGATGAAA GAACCTTTGT GGAACGAGAT
GCTGCTGGGA AAGTCAGCCA CTACCAAGGG TTCATTATCG ATATCGATGA ACGCAAGCGG
ACCGAGTTGG TCATGGCGGC ACGTATGCGT CTCCTGCAAC TTGCAACCAA CAACACCCTC
GCCCAACTTC TGGAAGCTAC GCTGGATGAG GCCGAGGCGT TGACCGAAAG CCGAATGGGG
TTCTATCACT TCCTCGAAGA TGACCAGAAA ACCCTTTCTC TACAAGCTTG GTCTAGAAGA
ACAAAAAGTG ATTTCTGCAA CATAGAAGGG GCGGGCCTGC ACTACCCATT GGAAAAGGCC
GGTGTCTGGG TCGATTGCAT TCGCGAGCGA AGAGCGGTAT TCCACAACGA CTATGCCTCG
CTTCCCCACG CCAATGGATT GCCAAAGGGA CACCCTCCGA TAGTACGGGA ATTGGTCGTG
CCGGTATTTC GAGGTGAGAA AATTGTGGCT GTTCTTGGGA TGGCGAACAA AGCAGAAGCT
TATACGCAAA GAGATGCGGA GGCAGCCTCC CTTCTGGCCG ATTTTGCCTG GACCACTTTA
GAGAGAAAGC TTACCGAGGA ATCCCTCCAG GTCTCCGAAC AGAAATACCG CCATATTGTC
GATCATGCTC CTTTCGGAAT TACTCGCACC ACCAGGGATG GCAAGCTAAT CAGCGCCAAC
CCGGCCATGG CCAATATCCT GAAATACGAT TCTTCCCAAG AGCTTTTAGA GACCATTGGT
CGCTCCAGCC TTCAGGAGGT AATTTTTTCC AATCCTGCAG ACCGGGAAGA TATGGTGGAT
AAAGTTATCA TCAGCAATTC CTGGTGCCTC CATAACCTGA GCCTGCGTTG CAAAGATGGT
AGTTTGGCAA CCTGCAGAGT GCACTCCCGA CGATTGTCGG AAAAGGGTAG TCAGAATTGG
GAATACGAAA ACTTTTTAGA GGACATTACT GAGCAGCTGG AAACGCAGCA GACTCTTCAG
AAGAACAAAA AGAATATCCA ACAACTAGCC GAAAACACCG AAGCGGTGCT TTACGAATAT
AACCTTAGCG ATAATAAATG GACTTACATG GCCCCCCAGG TTGAACGCAT TTTCGGGTAT
AAACCCGAAG ATTGGATAGA CAACCAGTTT TGGCTGGATC GAGTCCACGA AGCCGACTGG
GGAAAAGCGT CACGCGAAGA ACTGTCAAAA TTGAATCAGC AAGAGGCTCA TTCTATTGAG
TATCGATTTT ATAAAAAAGA CGGCAGCATT GTCTGGGTGA GAGACATTAT TAGGATAGAA
AGCGATGCCG AAAACAAACT GTGTTTGCAC GGCTTACTAA TCGACATCAC TGATAGCAAA
CAATCGGAAA GCCAGCTAAA AAAGCTAAGT CGAGCTATTG AGCAAAGCCC TGTTTCAGTT
GTTATCACTG ACCCTGAAGG TAGAATCGAA TATGTGAATC CCAAATTCAC GCAGCTCACC
GGGTATACTC TGGAGGAGGT TATCGCTCAG AATCCGCGTA TACTGAAGTC GGGGAATCTC
TTGCCGTCTG TCTACGATTC CCTTTGGAAA ACTATCACCT CCGGAAAGGA ATGGTACGGT
GAGCTAGAAA ACAAGCGTAA AGATGGCAGT ATCTTTTGGG AGAGCGCCTC CATCTCCCCA
CTCTTTGACG AATCGGGAAA GATCATTAAT TTCATTGGAG TTAAAGAGGA TATCACCCAG
CGAAAGCTGA ACGAAAAACG CCTGGAATAT ATGGCGACTC ACGACGGGCT GACCGGCTTG
GCCAACCGGA CTCTGCTCTA TGATCATCTA GAGATCGCCC TTCATCAATC ACAACGATCC
AAAAAGCTGG TAGCGGTAAT TCTTTTAGAT CTAGACCGTT TCAAAGTGAT CAACGACAGC
CTAGGTCACT TAGTGGGGGA TCAAGTTTTG AAGGCTGTTG GCCAACGGCT GAAGCAATAC
GTTCGCAGCA CCGATACAGT GGCCAGACTT GGTGGAGACG AATTTGTGGT GCTGCTGACT
GATGTCAGGG ACACAACCGC GGCGGGGAAG ATCGCCCATA ACCTGTTGAG GAAACTGAAT
GAACCTTTTT TTCTCCATGG GCGCGAGCTT TACGTTAGTG CCAGCTTTGG TATCTGTCTT
TCGGAAACCG ACAACGTCGA CGGTACCATA CTGCTTCGTA ATGCCGATAT AGCGATGTAT
AAGGCAAAGG CGGAAGGTTG CGGGCTATAT TTTTATTCTC ACGAAATGAA CGAACATCTT
ATTAAGACCC TTGAGATGGA AAATAGCTTG CGACAAGCTT TGGAAAAAAA CGAATTCCAA
TTGTATTACC AGCCAAAAGT GGAACATGCA ACCGGCCGAA TAATCGGATG TGAGGCACTT
TTGCGCTGGA GGCATCCGCA GAGGGGAATG ATTCCACCTA GTGAATTCAT CCCGCTTGCC
GAAGAAACAG GCTTAATTGT GCAAATCGGT CATTGGGTGC TAGCAGAGGC CTGCCGTCAG
TCCAAGATTT GGGAGACAGA GGGGCTGCCG CCACTGACCA TGGCCGTCAA TATCTCGGCC
CGACAGTTTT ATCAGGGAGA GAACCTCATC CAGGCGGTCA AGTCAACTCT GGAGCGTTCT
CAACTGGTCC CCTCGCAACT GGAGTTGGAG CTCACTGAAA GCATGGTCAT GAAAGATGCC
GTCAATGCCG AGCGAACCAT GCGCAAAATA AAACAACTTG GGGTCAGTCT AAGCTTGGAT
GATTTTGGCA CAGGCTATTC AAGTTTAAAC TACCTTCGCA GTTTCCCCGT GGATTCTCTT
AAAATCGACC GCTCATTCAT TTTGGACATT GCCAGCGACG CCAGCAGCGC CGCAATCCTC
AATAGCATCA TCGCTATCGC CCACACTCTG GGTTTGCAAA CCGTAGCTGA AGGCGTTGAA
AACAACGATC AACTTGCCCT GGTAGCCAAT TGCGGTTGTA ATTATATTCA GGGATATCTT
TTCAGCCGCC CTTTGCCACC TGAAGACTTT GTCGCTCTTT TTCTGGCCAA TAAAGGGAAG
ATTGCCACCC CCGAACAAAT CTCCTTATGC AAAAATTCTC AGAACACTAA CTACTTAAAG
CAAGACAAAA TGAATGCTAT CCCAATAACA TGCCCTCCTT GGTAG
 
Protein sequence
MVSAQLNILL VENDPSYADA IRNVFLATCP SWNVKQVDTL QKSHLLMAGE VPDLVLIAID 
LHDENAIETL TLPPEDAPCP IIVMATKVKE DAAMEVLKAG AMDFIVKSPE AIRELPHRVA
RVLDHWRVRQ DNTLLEMELC QANLIVDNSP AVLFHWKAED GWPIVSVSKN ISQFGYAQEE
LMSGDFSYAT LVHPKDLDRL EEELQAQINR GERIFQTEYR IITKQKEVRW VDERTFVERD
AAGKVSHYQG FIIDIDERKR TELVMAARMR LLQLATNNTL AQLLEATLDE AEALTESRMG
FYHFLEDDQK TLSLQAWSRR TKSDFCNIEG AGLHYPLEKA GVWVDCIRER RAVFHNDYAS
LPHANGLPKG HPPIVRELVV PVFRGEKIVA VLGMANKAEA YTQRDAEAAS LLADFAWTTL
ERKLTEESLQ VSEQKYRHIV DHAPFGITRT TRDGKLISAN PAMANILKYD SSQELLETIG
RSSLQEVIFS NPADREDMVD KVIISNSWCL HNLSLRCKDG SLATCRVHSR RLSEKGSQNW
EYENFLEDIT EQLETQQTLQ KNKKNIQQLA ENTEAVLYEY NLSDNKWTYM APQVERIFGY
KPEDWIDNQF WLDRVHEADW GKASREELSK LNQQEAHSIE YRFYKKDGSI VWVRDIIRIE
SDAENKLCLH GLLIDITDSK QSESQLKKLS RAIEQSPVSV VITDPEGRIE YVNPKFTQLT
GYTLEEVIAQ NPRILKSGNL LPSVYDSLWK TITSGKEWYG ELENKRKDGS IFWESASISP
LFDESGKIIN FIGVKEDITQ RKLNEKRLEY MATHDGLTGL ANRTLLYDHL EIALHQSQRS
KKLVAVILLD LDRFKVINDS LGHLVGDQVL KAVGQRLKQY VRSTDTVARL GGDEFVVLLT
DVRDTTAAGK IAHNLLRKLN EPFFLHGREL YVSASFGICL SETDNVDGTI LLRNADIAMY
KAKAEGCGLY FYSHEMNEHL IKTLEMENSL RQALEKNEFQ LYYQPKVEHA TGRIIGCEAL
LRWRHPQRGM IPPSEFIPLA EETGLIVQIG HWVLAEACRQ SKIWETEGLP PLTMAVNISA
RQFYQGENLI QAVKSTLERS QLVPSQLELE LTESMVMKDA VNAERTMRKI KQLGVSLSLD
DFGTGYSSLN YLRSFPVDSL KIDRSFILDI ASDASSAAIL NSIIAIAHTL GLQTVAEGVE
NNDQLALVAN CGCNYIQGYL FSRPLPPEDF VALFLANKGK IATPEQISLC KNSQNTNYLK
QDKMNAIPIT CPPW