| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1287 |
|---|
| Symbol | spoT |
|---|
| ID | 3723589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | + |
|---|
| Start bp | 1507741 |
|---|
| End bp | 1509897 |
|---|
| Gene Length | 2157 bp |
|---|
| Protein Length | 718 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637750876 |
|---|
| Product | (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase |
|---|
| Protein accession | YP_356706 |
|---|
| Protein GI | 77918891 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000000000134256 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCGTT TAGATGAAAT AATCGAAAAG ATTCTGCTCT ACAATCCTCA GGCCGATGTC
GACGTTCTGC GTAAGGCATA CGTTTACAGT GCCAAGGTTC ATCGTGGCCA ATCACGCTTG
TCCGGTGAGC CTTATCTCAA CCACAGCCTT GAAATTGCCA ATATTCTCAT CCGGCTCAAA
ATGGATGTGC CGACCATCAC CACCGGTTTG CTGCACGATA TCCTTCAGCA GAATCTGGTC
GATGCGACGG AGTTGCAGAC TCATTTCGGT GAAAATGTCG GGGAGTTGGT ACAGAGCCTG
ACCCGCCTCG GCCGCATAAC CTTTACCACG AGTGAAGAGC AGCAGGCCGA GAATTTCCGT
AAAATGTTGC TGGCTATGGC CAGCGATATA CGGGTCATTC TGGTCAAGCT TGCCGAGCGA
CTGCACGATA TGCGTACCCT GGAAAGCCGC GATGCCGCCG AGCAGCGGCG TATTGCCCAG
GAAACCCTCG ATATTTATGC GCCGCTGGCC AATCGCCTCG GTATCAGTTG GATGAAATGC
GAACTGGAAG ATTTGTCCTT ACGCTACGTT TTGCCCGAGG TCTATTCCGA ACTGCGCACC
AAAGTCGAAC TGCAGAGTAA AAACCGGGCG GGTTATGTGG AGGAAGTTCG TAAGCAGTTG
TACGAAAAAA TGGTGCAGAA CGGCATCGAG GGAGAGTGCT ACGGCCGTCA GAAACATCTG
TATTCCATCT GGCGTAAAAT GCAGCGTCAG GGCATCGAAT TCGAACAGGT CTATGATCTT
ATCGCTTTTC GGGTGCTGGT AAAGGACGTG CGGGACTGTT ATGCCATGCT GGGCGTGATT
CATGCGGCCT GGAAGCCTAT CGCCAGCCGT TTCAAGGATT ATATCGCCAT GCCCAAGGCG
AATATGTACC AATCGCTGCA TACCACGGTT ATCGGGCCCT ACGGAGAGCG GATGGAGGTC
CAGATCCGGA CCGAGGAGAT GCATCGGGTC GCTGAGGAAG GTATCGCCGC CCACTGGAAA
TATAAGGAAG GGCGGGGTGG CGACAGTGTC GTCACCAAAG ATGAGAAGCA ATTCGGCTGG
TTGCGGCAAA TGCTCGATTC CCAGCAGGAG TTCTCCGATT CCCACGAATT TGTCGGTTCG
GTGAAAGGCG ATCTGTTTTC CGAGGAGGTC TATGTCTTTT CCCCCAAAGG TGAGGTGAAG
GCTTTCCCTC GTGGCGCAAC GCCCATTGAC TTCGCTTACA GCGTGCATAC GGAGGTCGGT
AATCGCTGCG TCGGCGCGCG CGTCAACGGT AAGCTGGTGC CGCTGAAAAC CCCTCTTAGC
AATGGCGATG TGGTTGAGGT CGTGACATCC CCCAACCAGA CACCCAGCAA AGACTGGCTC
AAGTTTGTCG TCACCTCGCG GGCGGCCAGT AAAATCCGCC ACTGGGTCAA GACCCAACAG
CGGGAAAAAA GTATCGAGCT CGGCAAGGAG CTGTTTGAAA AACGACTGCG CAAGTACGGA
TGCAGTCTCA AGAAAGTTTT GGCCTCCAAG GAGTTTTCCC AGGCGATGCA GGAGCTTGGT
TATCATGCCT CCGCCGATTT GCTGGCCGGG ATCGGCTACG GCAAGGTGCC GCTTGGCCAG
GTGGTCAGTC GGGTGATTCC CGCCGATGTA CGGCGCCCTG AAACGGAAGA TAAGGAGACG
CTTCTGCCGG AAGCCGGACC TGTCCGTAAA AAGCCTTCAA GCGCCATCAA GATTCAGGGG
ATTGGCGATA TCATGGTGAG GTTCGCCAAA TGCTGCAATC CGTTGCCGGG TGATCCGGTG
GTAGGTTTTA TTACCCGTGG TCGTGGTATT ACCGTGCATA CGGTCGATTG TCCAAGCGTT
TTGGAAAGTG ATGCGGACCG GCAAATCGAG GTTGAATGGG ATGTCAAGAA AAAGGCATCG
CATACGGCCA AGATCCGCCT GGCTACCGAG GACCGCAAAG GGGTCCTGGC CAACGTCAGC
AATGCCATCA GTGCCTGTGA AGCCAACATT TCCAGCGCCA GTGTTCAGCG GACCAAAACC
CATAAGAGTC TTATTGTTTT TGCGGTGGAG GTGGACGATG TGGAGCACCT CAATCGCGTA
ATCAATGCCC TGCATCAGGT AAAAGGAGTC TATCAGGTCG ATCGCTTGCG GCACTGA
|
|---|
| Protein sequence | MLRLDEIIEK ILLYNPQADV DVLRKAYVYS AKVHRGQSRL SGEPYLNHSL EIANILIRLK
MDVPTITTGL LHDILQQNLV DATELQTHFG ENVGELVQSL TRLGRITFTT SEEQQAENFR
KMLLAMASDI RVILVKLAER LHDMRTLESR DAAEQRRIAQ ETLDIYAPLA NRLGISWMKC
ELEDLSLRYV LPEVYSELRT KVELQSKNRA GYVEEVRKQL YEKMVQNGIE GECYGRQKHL
YSIWRKMQRQ GIEFEQVYDL IAFRVLVKDV RDCYAMLGVI HAAWKPIASR FKDYIAMPKA
NMYQSLHTTV IGPYGERMEV QIRTEEMHRV AEEGIAAHWK YKEGRGGDSV VTKDEKQFGW
LRQMLDSQQE FSDSHEFVGS VKGDLFSEEV YVFSPKGEVK AFPRGATPID FAYSVHTEVG
NRCVGARVNG KLVPLKTPLS NGDVVEVVTS PNQTPSKDWL KFVVTSRAAS KIRHWVKTQQ
REKSIELGKE LFEKRLRKYG CSLKKVLASK EFSQAMQELG YHASADLLAG IGYGKVPLGQ
VVSRVIPADV RRPETEDKET LLPEAGPVRK KPSSAIKIQG IGDIMVRFAK CCNPLPGDPV
VGFITRGRGI TVHTVDCPSV LESDADRQIE VEWDVKKKAS HTAKIRLATE DRKGVLANVS
NAISACEANI SSASVQRTKT HKSLIVFAVE VDDVEHLNRV INALHQVKGV YQVDRLRH
|
|---|
| |