Gene Pcar_1264 details

Gene Information

• Locus tag: Pcar_1264
• Symbol: rfaC
• ID: 3723605
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: +
• Start bp: 1484651
• End bp: 1485703
• Gene Length: 1053 bp
• Protein Length: 350 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637750853
• Product: heptosyl transferase I
• Protein accession: YP_356683
• Protein GI: 77918868
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0859] ADP-heptose:LPS heptosyltransferase
• TIGRFAM ID: [TIGR02193] lipopolysaccharide heptosyltransferase I; [TIGR02195] lipopolysaccharide heptosyltransferase II

Plasmid Coverage information

• Num covering plasmid clones: 98
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGAGTGC TGATTGTTAA AATCAGTGCC CTGGGCGATG TGGTGCATGC GTTACCGGTG 
CTCGCCTATC TCAAGGAGGC CCATCCGGAG ATCAAGATCG ACTGGTTGGT CGAAGAAGGC 
TTCGCACCGC TGATCGAAGG CCACCCGATG TTGCGGCGGG TTTACCGTCT TGGACTCAAG 
CGCTGGCGGC GCGAGGGCTG GAGATCCGTT CTCGCAGGCG TTAAGTCCAC AGTGCACGAG 
TTGCGTAACG AGCGTTACGA TATGGTTCTC GATTTGCAGG GGAACTGTAA AAGTGGTCTC 
TTTACTTTGC TATGCGGTGC TCCCCGGCGG TACGGATTTT CTTTCAGTGG CGTGCGGGAA 
TGGCCGAACC TGCTTGCGAC CAATCGCAGG GTTGTATTGA CTGCCGCCGA CCATCATATC 
AGTGATCGTT CCCTGGCGGT GGCACGCGAG GCGTTTCCTG TCGGCAATGC GCGTTCCGCG 
GCGGGGCCTT TGCACGTGAC ACCTCAGGCA CGTACAGCGG TGGAGAAGCA GCTCGGTTCA 
TTTAATATGA ATGGCCCATC GCTGGTTGTC CTGCAATACG GAACGACCTG GGAAACCAAA 
CTCTGGCCCC TTGATTCCTG GCAGCGATTG GCTCGCACGC TCTGTACGGA AGATAACCTG 
CGACCGGTAT TGATATGGGG CAACGAGGCC GAACGTGACG CCGCCGAGGC CATTTACCGG 
GCTACCGATG GACAGGCCGT GATCTGGCCG CGCGGCACTT TACAGGAACT TGCCGCGCTC 
CTGGAGAGAG CCGATTTAGT GATCGGAGGC GATACCGGTC CGATTCATAT TGCTGCCGCC 
CTCGACACTC CTACCGTGTC GATTTTCAGA GTGACGGACG GATCCCGAAA CGGGCCGCGT 
GGGCCACTTC ACATACGTTT GCAGAGTCCC CTGGAATGTT CGCCTTGTCT TCAGAAATCA 
TGTCCAAGGG ATGCGGAATG CGGACATAGC ATTACCGTTA ACCAGGTGCT GGACGCCACA 
CGCAAACAAC TCAAAAGACA GGGCCAACAA TGA 

 

Protein sequence

MRVLIVKISA LGDVVHALPV LAYLKEAHPE IKIDWLVEEG FAPLIEGHPM LRRVYRLGLK 
RWRREGWRSV LAGVKSTVHE LRNERYDMVL DLQGNCKSGL FTLLCGAPRR YGFSFSGVRE 
WPNLLATNRR VVLTAADHHI SDRSLAVARE AFPVGNARSA AGPLHVTPQA RTAVEKQLGS 
FNMNGPSLVV LQYGTTWETK LWPLDSWQRL ARTLCTEDNL RPVLIWGNEA ERDAAEAIYR 
ATDGQAVIWP RGTLQELAAL LERADLVIGG DTGPIHIAAA LDTPTVSIFR VTDGSRNGPR 
GPLHIRLQSP LECSPCLQKS CPRDAECGHS ITVNQVLDAT RKQLKRQGQQ