| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1201 |
|---|
| Symbol | |
|---|
| ID | 3723698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | + |
|---|
| Start bp | 1409912 |
|---|
| End bp | 1410400 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637750790 |
|---|
| Product | CheD-like chemotaxis protein |
|---|
| Protein accession | YP_356620 |
|---|
| Protein GI | 77918805 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1871] Chemotaxis protein; stimulates methylation of MCP proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 0.331529 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATC TTATTTTGGG TATCGGGGAA TATGGTGTGT CCAAAACCCC CGGTTCCATG
GTTAAAACAT ACGCCCTCGG TTCATGTGTA GCCGTAACCA TGTATGAACC GAATCTGAAA
ATAGCCGGAA TGGTTCATGT GGCCCTTCCC GAATCCAAAC TTAATACCGC CAAGGGCGAG
CAATGTCCGG GATATTTTGC CGATCTCGGC GTCCCCTTGC TGTTCAAGGA AATGGTGCGT
TTGGGGTGTC ATGCACGAGG ACGGGGTTTG GTCGTCAAAA TGCTCGGCGG CGCTGCTGTT
ATGGCAGGCA ACGATACGTT TAATATAGGC AAGCGCAATA TCCTTGCGGT AAAAAAGATT
TTGTGGAAGC TGGGGATGGG ACCGGTCGCC GAAGATGTCG GCGCTAATTA TAGTCGCACG
GTATCGTTGC ACGTCGATAC CGGCTTGGTG AACGTGTCAT GTCCCGGACG CGGCCAATGG
CAAATATAG
|
|---|
| Protein sequence | MSDLILGIGE YGVSKTPGSM VKTYALGSCV AVTMYEPNLK IAGMVHVALP ESKLNTAKGE
QCPGYFADLG VPLLFKEMVR LGCHARGRGL VVKMLGGAAV MAGNDTFNIG KRNILAVKKI
LWKLGMGPVA EDVGANYSRT VSLHVDTGLV NVSCPGRGQW QI
|
|---|
| |