| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1100 |
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| Symbol | mexF |
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| ID | 3723885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 1292940 |
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| End bp | 1296122 |
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| Gene Length | 3183 bp |
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| Protein Length | 1060 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637750690 |
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| Product | AcrB/AcrD/AcrF family cation efflux protein |
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| Protein accession | YP_356519 |
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| Protein GI | 77918704 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATTG CCAAATTCTT CATCGACCGG CCTATATTCG CTACGGTTCT TTCGGTTCTC
ATCGTGATTG TCGGCGGGCT GGCCTATTTC AGCCTGCCGA TCGAGCAATA TCCGCAGGTG
GCGCCGCCGA CCATCGAGAT CACAGCCACC TATCCCGGCG CCAATGCCGA GACCGTGGCA
GCCACCGTGG CCACGCCGAT CGAGCAGGAA GTCAACGGTG TCGAGGGGAT GCTCTACATG
TTCTCCCAGT CGACCTCCGA CGGTCGCATG ACCCTGACCA TCACCTTTGC CCTGGGAACC
GACCTGGATA CCGCCCAGGT GCTGGTGCAG AACCGTGTTG CCGTGGCCGA ACCCCGCCTT
CCGGAAGAAG TGCGTCGCTT GGGCATAACC ACGAAAAAGA ACACGCCGGA TCTGATGCTG
GTCGTCAACA TGTATTCACC GGACGGCACC TATGATCAGA CCTATATCGG TAACTACGCG
GTTCTGAATA TCCTTGACCG CATCCGACGC ATCGATGGGG TTGGCAATGT CCGCCTGTTC
GGAGCGTCGG AATATGCCAT GCGCATCTGG CTCGACCCGG ATCGCATTCA ATCATTCGGC
ATGACGCCCG GCGACGTGTT GGATGCGCTG CGGGCACAGA ACGTCCAGGT CGCCGGCGGT
GCGCTGAATC AAGCGCCGCA ACCGAAACAG AACTATTACG AATATGTCGT TCAGACACAG
GGCAGGCTGA AAGCACCGGA AGAGTTTGGC GACATCATCG TGAAATCCGG CGAGAACGGC
CGGATCGTAT ATCTGCGGGA TATTGCGCGG ATCGAGTTGG GTGCGCAGGA TTACGCGACC
AAGGGTTATC TGGGTAAATA CCCGGCCGTG GCCTTGCCCG CCTATCAACG GCCCGGCTCC
AATGCATTGG AGACGGCCGA TGCGATCATC AAGGAGATGC GCGAAATAGG GAAGGATTTT
CCTCCCGGTC TGCAATACGA CATCGCCTAC AATCCGACCC AATTTATCGA AGAGTCCGTC
GTTGCCGTCC AGCACACCGT GTACGAAGCC ATTGTTCTGG TGCTCATCGT GATCGTCCTT
TTTCTGCAAA CCTGGCGGGC GGCGATTATT CCGATTGTCG CCATTCCGGT TTCGCTGATC
GGAACTTTTG CCGTCATGGC CGCGCTCGGT TTTTCCCTGA ATACTCTTAC CTTGTTCGGA
CTGGTACTGG CCATCGGAAT CGTGGTCGAT GACGCGATCG TGGTGGTGGA GAACATGGAG
CGCAACATGC GCGCCGGGCT ATCGCCCAGG GATGCTGCCC GCAAGACGAT GACCGAGGTC
GGCTCGGCCC TGGTAGCCAT TGGGCTGGTG TTGGTCGCCG TGTTCCTGCC CACAATTTTT
CTCGGAGGGT TGTCGGGGAA ATTCTATCAG GCATTCGGCA TTACCATTGC CGTGGCGACC
ATGATCTCGG TCTTTGTTTC CCTGACCCTT TCGCCTGCTT TGGCAGCCAT TCTGATGAAA
CCGGGCGACC ATGATACTCA CGGACCCGGA CGATGGTATA AGACGCCGCT GAGATTTTTC
TTCCATTATT TCAACACCGG AATGGAATGG CTATCGGATC GCTACGGCAG ACTGGTTGGC
AAACTGGTGT TTCTGGGCGG CCCGGTTCTG CTGCTTTACG CGGGCTTGAT GGCGCTGACC
GGCTGGCAAT TCGACCGCGT TCCATCCGGT TTTATCCCGC CTATGGATCA GGGCTATGCC
ATTGTTTCGG TAGAGCTTCC CCCCGGTGCG TCCCTGTCGG AAACCGACAA GGTTGTGCAA
GTGGCGACCC GCAAACTTCT GGCCATTGAT GGCGTGGATG ACGTGATAGG TTTTGCCGGC
TTTTCAGGGG CGACGCGCGC CAACGCTTCC AACGCGGCTG GGCTGTTTCC AACGCTGAAG
CCGTTCAAGG AACGGGAAAA GAAAGGCATT ACCTTCGAAA GCCTGTTGCA GAAAATGCGT
ACCGAGATGG CCACGATCAA GGAGGCCTCC ATAGTCGTCA TCCCACCGCC GCCGGTGCGC
GGCATCGGAT CTGCCGGGGG CTACCGGATG ATGATTCAGG ATCGCGGGGG GCGAGGCGTG
GACGCATTGA ACAGTGCGGT CTGGGCGATG GCCGAAGCGG CCAACGGGCC AGGAACCCCG
GAGACGCGTT CCGTTTTTAC CTTCTTTGAA AAAAATACGC CGCAGACTTT TCTGGATATC
GACCGCGAAA AGGCCGAACG CCTGCATGTG CCGGTCTCCC GCGCATATGA AGCGCTGGAG
GTCTTTATCG GCTCCGCCTT CGTAAACGAT TTCAACTACC TGGGACGGAC ATTCCGGGTT
ACAGCGCAGG CCGATGCACC CTACCGGTTG AGTGCCGAAG ACATGTTGCG CATCAAGGTG
CGCAGCGACG ATGGGGCCAT GGTGCCGCTT GGCTCGATCG CCCGTGTCCA TAATGCGGCG
GGTCCGTCCC GCATGCCGCG CTACAACCTG TATCCGTCTG CCGCTTTGAT CGGCGACACG
GCCCCCGGGT ACAGTTCTGG GCAGGCCCTG GAAGCCATGG AGCGGTTGGC CGACAAAGTC
TTGCCCGAAG GGATCGGCTA CGAGTGGACG GAACTCGCTT ACCAGCAAAA AGCGACCGGA
AATACCGCGG TCATTGCCTT CGTCCTGGCG GTAGTCTTTG TGTTCCTGTT GCTGGCGGCC
CAATATGAAA GCTGGACCCT GCCGCTTTCC GTCATTCTGA TCGTGCCGAT GTGTCTGCTG
TCGGCGATCA GCGGCGTGGC CCTGATGGGG ATGGACAACA ATGTCCTGAC CCAGATCGGT
TTTGTCGTGC TGGTGGGGCT GGCATGCAAG AACGCCATTC TGATCGTCGA ATTCGCCCGC
GAACTGGAAC GGCAGGGCCG CGACCGCTGG CAAGCTGCTG TCGAGGCGGC ACACCTGCGC
CTGCGCCCGA TTCTTATGAC CTCCTTTGCC TTCATTCTCG GCGTGGTGCC GATGGTGCTT
GCCCAGGGAG CCGGAGCGGA AATGCGCCGG GCTCTGGGGG TGGCGGTCTT TTCCGGCATG
CTGGGCGTAA CCTTTTTCGG TCTGGTTTTC ACGCCTGTTT TTTACGTGCT GTGCCGCAAG
CTGTCCCTGA TCAGGGTTAA AGAAGCCCCC GGTAAAGCCG CCCCGGAAGG AACCGAATCA
TGA
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| Protein sequence | MNIAKFFIDR PIFATVLSVL IVIVGGLAYF SLPIEQYPQV APPTIEITAT YPGANAETVA
ATVATPIEQE VNGVEGMLYM FSQSTSDGRM TLTITFALGT DLDTAQVLVQ NRVAVAEPRL
PEEVRRLGIT TKKNTPDLML VVNMYSPDGT YDQTYIGNYA VLNILDRIRR IDGVGNVRLF
GASEYAMRIW LDPDRIQSFG MTPGDVLDAL RAQNVQVAGG ALNQAPQPKQ NYYEYVVQTQ
GRLKAPEEFG DIIVKSGENG RIVYLRDIAR IELGAQDYAT KGYLGKYPAV ALPAYQRPGS
NALETADAII KEMREIGKDF PPGLQYDIAY NPTQFIEESV VAVQHTVYEA IVLVLIVIVL
FLQTWRAAII PIVAIPVSLI GTFAVMAALG FSLNTLTLFG LVLAIGIVVD DAIVVVENME
RNMRAGLSPR DAARKTMTEV GSALVAIGLV LVAVFLPTIF LGGLSGKFYQ AFGITIAVAT
MISVFVSLTL SPALAAILMK PGDHDTHGPG RWYKTPLRFF FHYFNTGMEW LSDRYGRLVG
KLVFLGGPVL LLYAGLMALT GWQFDRVPSG FIPPMDQGYA IVSVELPPGA SLSETDKVVQ
VATRKLLAID GVDDVIGFAG FSGATRANAS NAAGLFPTLK PFKEREKKGI TFESLLQKMR
TEMATIKEAS IVVIPPPPVR GIGSAGGYRM MIQDRGGRGV DALNSAVWAM AEAANGPGTP
ETRSVFTFFE KNTPQTFLDI DREKAERLHV PVSRAYEALE VFIGSAFVND FNYLGRTFRV
TAQADAPYRL SAEDMLRIKV RSDDGAMVPL GSIARVHNAA GPSRMPRYNL YPSAALIGDT
APGYSSGQAL EAMERLADKV LPEGIGYEWT ELAYQQKATG NTAVIAFVLA VVFVFLLLAA
QYESWTLPLS VILIVPMCLL SAISGVALMG MDNNVLTQIG FVVLVGLACK NAILIVEFAR
ELERQGRDRW QAAVEAAHLR LRPILMTSFA FILGVVPMVL AQGAGAEMRR ALGVAVFSGM
LGVTFFGLVF TPVFYVLCRK LSLIRVKEAP GKAAPEGTES
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