| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1091 |
|---|
| Symbol | |
|---|
| ID | 3723876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 1280121 |
|---|
| End bp | 1281044 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637750681 |
|---|
| Product | putative AraC-type regulatory protein |
|---|
| Protein accession | YP_356510 |
|---|
| Protein GI | 77918695 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 74 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAAG AAAACGGCAA AACCAGTGAT GCGCTGGAAT GCTTACTCCA GAGAATTGCC
CGATTGACTG AACAGGGCGA GCTGCACACA ACTGCCATCC CCGGCCTGTC GCTCTTCAGG
CGGACTGAGC CAACCGAACC GGTCACAGGC ATGTACCAGC CGAGTATCTG TCTGATTGCG
CAGGGAGCCA AACGCGTGAA GTTGGGCGAC GAAAGCTTGG TCTACGACGC CCAGCATTAC
CTCATCACCT CGGTGCACCT GCCGACGGTC GTGCAGATCA CCGAAGCCAG TCCGGAAAAA
CCTTACCTGG GGCTGCGGCT GACCTTCGAC CTGCGCGAGG TTTCCCAGCT CATGGCGGAT
AGCCAGCTTC CGCCGCCACG GACCCGGGAG TCGAGCCGCG GCATGGCGAC CGGCGAGGTG
ACGCGGCCGC TGCTAAACGC TTTTCAGAGA CTTATCGATC TGTTGAATGA GGATGAGGAT
ATCCCGATCC TGGCACCGGT TATCCAAAGG GAGATCATCT ACCGCCTGCT GGTGGGGGAT
CAGGGCGCAC GGTTGCGCCA GATCGCGACG GCGGGGAGCC AGAGCCAGCA GATAGCCAGG
GCGATCGAAT GGTTAAAGGG CAACTTCACG CAACCCTTGC GCATCGACGA TCTCGCCGAA
CAGGCAAGCA TGAGCACCTC GACCTTTCAT CATCACTTCC GTTCGATGAC CGCTCTCAGT
CCCTTGCAGT ATCAAAAGCA ACTCCGCTTA CGGGAGGCCA GGCGTTTGAT GCTCATGGAA
CGCCTGGATG CAGCTACTGC CGGCTTCCAG GTCGGCTACG AAAGTCCTTC CCAGTTCAGT
CGGGAGTACA GTCGTCTGTT CGGTGCGCCA CCATTGCGCG ACATTACCAA CCTTCGGCAG
GTCGCAGGAG GGAAAAGAGG ATAA
|
|---|
| Protein sequence | MRKENGKTSD ALECLLQRIA RLTEQGELHT TAIPGLSLFR RTEPTEPVTG MYQPSICLIA
QGAKRVKLGD ESLVYDAQHY LITSVHLPTV VQITEASPEK PYLGLRLTFD LREVSQLMAD
SQLPPPRTRE SSRGMATGEV TRPLLNAFQR LIDLLNEDED IPILAPVIQR EIIYRLLVGD
QGARLRQIAT AGSQSQQIAR AIEWLKGNFT QPLRIDDLAE QASMSTSTFH HHFRSMTALS
PLQYQKQLRL REARRLMLME RLDAATAGFQ VGYESPSQFS REYSRLFGAP PLRDITNLRQ
VAGGKRG
|
|---|
| |