| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_1020 |
|---|
| Symbol | |
|---|
| ID | 3723961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | + |
|---|
| Start bp | 1196293 |
|---|
| End bp | 1198704 |
|---|
| Gene Length | 2412 bp |
|---|
| Protein Length | 803 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637750611 |
|---|
| Product | ATP-dependent protease |
|---|
| Protein accession | YP_356440 |
|---|
| Protein GI | 77918625 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1067] Predicted ATP-dependent protease |
|---|
| TIGRFAM ID | [TIGR00764] lon-related putative ATP-dependent protease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 67 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCAAT TCAAGCTTTC ACCTCAGGAA CTTTTTTGGA AGTGCGATGC GGCGCAATTC
GAATTTTCCA GTACCGATGA GCTTCGTTTT CTGGAAGAAA CCATCGGCCA GGAACGCGCC
TTGACGGCGA TCGAATTCGG GCTGAGCATC GATTCCAACG GTTTCAATAT CTTCGTGCTG
GGAGAGTCCG GCACCGGACG TTCCTCAACT ATCAAGAGGG TGTTGGAGCG TCGCTGCAAA
GATGAGCCTG TCCCTGACGA TTGGTGCTAT GTGCATGATT TCAAAAATGC GGACCGGCCC
AATTGCGTTC GTTTGGCCGC GGGACTCGGA AAAACCTTCC AGGGGGATAT GGAGACCCTT
ATCAGCCATC TCGCCGAAGC TATCCCAAGG CTTTTCGAAA GCAAGGAATA CGAGCAGGCA
AAAAACAGCA TTACTCAGGA GTCCCAGGAA AAAAACAAGA AACTGGTTCA GGAACTGGAG
GCGAAAGTCA ATGCCGAAGG TTTTCTTTTG CAGCGCACTG TGGGCGGTTT GGTGCTGGTT
CCGACCCGTG ACGGGCAGCC GTTGTCGCAG CAGGAATATG GCGAATTGGA TGAAAAGGAA
CAGCAGGAAC TTGAAGAGAA GGGCGGCCGT TTGCAGGAAA TGCTTAACGA TACCCTGCGA
CAGATTGTGG AGTTGGAGAA ACGGCTGCGT ATTTCTCTGC ATGAAATGGA AAAGAATTTT
CTGAATACGG CCTTGCAGCA TTTGTTCGAG GACCTGGAAG AGAAGTACAA AGATCACGCC
AGGGTGCTGG AACATTTAGG TAACTGCCGC GCGGACCTTC TCAACAGGGC CGACGAATTT
CGCCCCAGCC AGGGCCCGCA GGTGGCTCTC GGCGGTATGC GTACGGGTCG CCAGGAACCT
TCCTTCGATC AGTATCGGGT GAACCTGTTG GTCGATAACG GTGCCCTCGA AGGGGCGCCG
GTCGTCTATG AACCCAATCC TACCTATTTC AACCTTTTTG GCCGTATCGA ACACATCATC
CAGATGGGCA ATGCCACGAC CAATTTCACC ATGATCAAAT CGGGGGCTCT GCATCGTGCC
AACGGCGGTT ACCTGATTGT CGATTGTCGT GAGGTCCTTA TCAATCTGTT CTCCTATGAA
GCCATCAAGC GCTGCCTGCG CCACGGCGAA ATCAAGATCG AGGATATGGC GGAGCAGTAT
CGCCTGATCG CCACGGTGTC CTTGAAACCG GAGCCGATTC CCTTGAAATG TAAACTGGTG
ATGATCGGTT TGCCCATGTT TTATTACCTG CTTTACCAGT TGGATCCGGA TTTTCGCAAA
TATTTCAAAG TCAAATCCGA TTTTAACAGC ATCATGAAAA ATACATGGGA GAATGTGCAG
CATTATGCTT TGTTTATCGC AACTCAATGC CGCAAGGAAG GTATGCTGCA TTTTTCCCCT
GAAGGCGTGG CCAGCGTGGT CGAATATGCC GCCCGCCTGG CCGAAGATAA AAATCGCCTG
TCCTGCCGTT TCATGGATCT GTCCGATCTG ATCCGGGAGG CTTCGTTTTA CGCGGTGCGT
AACCGGGCGG AAAAGGTGGA ACGCAGTCAT GTGGAATTGG CCGTGGAGTC CAAGGAGTAT
CGCTCCAACA AGCTCGAGCA ACTGGTGCAG GAGTTTATTG AAGACGGGCG CATCCTGGTC
GATACCGCCG GAGAGGTGGT CGGTCAGATC AACGGCCTGG CGGTGTATCT GATGGGCGAT
TATTCTTTCG GCAAACCTTC GCGTATTACC GTGCGTACCT TTATGGGCAA GGGAGGCGTG
ATTAATATCG AACGCGAGGC CAAACTTTCC GGGCCTGTTT ACGATAAGGG CGTGCTTATC
TTGTCCGGTT TTATCGGCGA TCGATATGCT CAGGATAAAC CTCTCACCCT GGCCGCGTCG
ATCTGCTTCG AGCAATCCTA CTCAGGCGTC GAAGGGGACA GCGCATCGGC TGCGGAATTG
TTCGGTTTGC TGTCTTCTTT AGCCGGTCTG CCTTTGCGTC AGGGGATCGC TGTCACCGGA
TCTGTCAATC AGCGCGGTCA GTTGCAGCCG ATAGGCGGCG TCAATGAAAA GATCGAAGGT
TTTTATGCCG TTTGCAAAGC CAAGGGCTTT ACCGGTCAGC AGGGGGTGCT GATTCCGGAC
CAGAACAGGC AGAATCTGAT GCTCAAGCAG GAGGTTGTCG ACGCTGTAGA AGCCGGGCAA
TTTCATGTAT GGGCGGTGCG GCATATTGAC GAGGGGCTGG AAATACTTAC CGGCATACCG
GCCGGCCAGC AACTTGAAGA TGGGACATGG CCCGAGGGAA CGGTGAATTA TCGCGTCAAT
GCCCGACTGG AGGACATGGT CAAAGGGCTG CAGAAATTTG CTCGTCCCGA AGAAAAAAAC
TCGCAATCAT AA
|
|---|
| Protein sequence | MEQFKLSPQE LFWKCDAAQF EFSSTDELRF LEETIGQERA LTAIEFGLSI DSNGFNIFVL
GESGTGRSST IKRVLERRCK DEPVPDDWCY VHDFKNADRP NCVRLAAGLG KTFQGDMETL
ISHLAEAIPR LFESKEYEQA KNSITQESQE KNKKLVQELE AKVNAEGFLL QRTVGGLVLV
PTRDGQPLSQ QEYGELDEKE QQELEEKGGR LQEMLNDTLR QIVELEKRLR ISLHEMEKNF
LNTALQHLFE DLEEKYKDHA RVLEHLGNCR ADLLNRADEF RPSQGPQVAL GGMRTGRQEP
SFDQYRVNLL VDNGALEGAP VVYEPNPTYF NLFGRIEHII QMGNATTNFT MIKSGALHRA
NGGYLIVDCR EVLINLFSYE AIKRCLRHGE IKIEDMAEQY RLIATVSLKP EPIPLKCKLV
MIGLPMFYYL LYQLDPDFRK YFKVKSDFNS IMKNTWENVQ HYALFIATQC RKEGMLHFSP
EGVASVVEYA ARLAEDKNRL SCRFMDLSDL IREASFYAVR NRAEKVERSH VELAVESKEY
RSNKLEQLVQ EFIEDGRILV DTAGEVVGQI NGLAVYLMGD YSFGKPSRIT VRTFMGKGGV
INIEREAKLS GPVYDKGVLI LSGFIGDRYA QDKPLTLAAS ICFEQSYSGV EGDSASAAEL
FGLLSSLAGL PLRQGIAVTG SVNQRGQLQP IGGVNEKIEG FYAVCKAKGF TGQQGVLIPD
QNRQNLMLKQ EVVDAVEAGQ FHVWAVRHID EGLEILTGIP AGQQLEDGTW PEGTVNYRVN
ARLEDMVKGL QKFARPEEKN SQS
|
|---|
| |