Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_0936 |
Symbol | |
ID | 3724116 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | + |
Start bp | 1101987 |
End bp | 1102892 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637750527 |
Product | GGDEF domain-containing protein |
Protein accession | YP_356359 |
Protein GI | 77918544 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.000986982 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCTGT TTTTGTCGGA CTATGCAGAG ATTTTCGAAA ATCTTTTTGA GGGGCTCTAT GTCGTCGATA GGAATCGTGT GATCAGGCGC TGGAATCGCG CCGCTGAACA GTTGACGGGG TTTACCGCCG AGGAGATGAT CGGCAGGCGG TGTGAGGATA ATCTGCTGAA TCATGTCGAC GGTCATGGGC GGCAATTGTG CATATCGAAC TGTCCCCTGG TCGAGGCGAT GAATGAGGGA CAGGCGCTTG AAAATGAGGT GTTTCTTCAT CATAAAGATG GCCACCGTAT GCCCGTCAGA GTGCGTATCA ATCCGCTGCG CGACCGGTGC GGCGAGGTGG TGGGGGCCAC AGAGCTGTTT GTGGACATGA GTGAGATGTC CGGGATTATG CAACAGGTGG AAGACCTGAA GCGGCAGACC CTGACGGATA GGTTGACGGG GTTGCCGAAT CGAGCCTGCC TCGAGGGAGA ACTGCAGCGA AGCCTCGACG AATACAAACG ATACGGCTGG CCGGTCGGCC TGTTTTTCAT GGACATCGAT CATTTCAAGG CGGTTAACGA CACCTATGGG CATGAGCGCG GCGATGATAT CCTGCGCCTG GTGGCTACGA CTCTGGCCCA CAATTGCCGG GCCTCCGATA TTGTCGGGCG CTGGGGCGGC GAGGAGTTTG TCGGTCTGGT CCGTAATGCC ACTACGGCAT CCCTGTTGCA GGTGGCAGAG CGCAGCAGAA TGCTGGTGGA GCAGTCCTTC ATCATGGTCG ATGGACGCCC TCTCAATGTT ACCCTTTCCG TGGGAGCGGC GTTGGTACGA GAGGGGGAAT CCGCAGCCGG TCTCGTGCGA CGCGCCGATC ATCTGATGTT CGAAAGTAAG CATAAAGGCC GTAATTGTGT CAGCGCCGAT GTTTGA
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Protein sequence | MDLFLSDYAE IFENLFEGLY VVDRNRVIRR WNRAAEQLTG FTAEEMIGRR CEDNLLNHVD GHGRQLCISN CPLVEAMNEG QALENEVFLH HKDGHRMPVR VRINPLRDRC GEVVGATELF VDMSEMSGIM QQVEDLKRQT LTDRLTGLPN RACLEGELQR SLDEYKRYGW PVGLFFMDID HFKAVNDTYG HERGDDILRL VATTLAHNCR ASDIVGRWGG EEFVGLVRNA TTASLLQVAE RSRMLVEQSF IMVDGRPLNV TLSVGAALVR EGESAAGLVR RADHLMFESK HKGRNCVSAD V
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