Gene Pcar_0936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_0936 
Symbol 
ID3724116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp1101987 
End bp1102892 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content56% 
IMG OID637750527 
ProductGGDEF domain-containing protein 
Protein accessionYP_356359 
Protein GI77918544 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.000986982 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCTGT TTTTGTCGGA CTATGCAGAG ATTTTCGAAA ATCTTTTTGA GGGGCTCTAT 
GTCGTCGATA GGAATCGTGT GATCAGGCGC TGGAATCGCG CCGCTGAACA GTTGACGGGG
TTTACCGCCG AGGAGATGAT CGGCAGGCGG TGTGAGGATA ATCTGCTGAA TCATGTCGAC
GGTCATGGGC GGCAATTGTG CATATCGAAC TGTCCCCTGG TCGAGGCGAT GAATGAGGGA
CAGGCGCTTG AAAATGAGGT GTTTCTTCAT CATAAAGATG GCCACCGTAT GCCCGTCAGA
GTGCGTATCA ATCCGCTGCG CGACCGGTGC GGCGAGGTGG TGGGGGCCAC AGAGCTGTTT
GTGGACATGA GTGAGATGTC CGGGATTATG CAACAGGTGG AAGACCTGAA GCGGCAGACC
CTGACGGATA GGTTGACGGG GTTGCCGAAT CGAGCCTGCC TCGAGGGAGA ACTGCAGCGA
AGCCTCGACG AATACAAACG ATACGGCTGG CCGGTCGGCC TGTTTTTCAT GGACATCGAT
CATTTCAAGG CGGTTAACGA CACCTATGGG CATGAGCGCG GCGATGATAT CCTGCGCCTG
GTGGCTACGA CTCTGGCCCA CAATTGCCGG GCCTCCGATA TTGTCGGGCG CTGGGGCGGC
GAGGAGTTTG TCGGTCTGGT CCGTAATGCC ACTACGGCAT CCCTGTTGCA GGTGGCAGAG
CGCAGCAGAA TGCTGGTGGA GCAGTCCTTC ATCATGGTCG ATGGACGCCC TCTCAATGTT
ACCCTTTCCG TGGGAGCGGC GTTGGTACGA GAGGGGGAAT CCGCAGCCGG TCTCGTGCGA
CGCGCCGATC ATCTGATGTT CGAAAGTAAG CATAAAGGCC GTAATTGTGT CAGCGCCGAT
GTTTGA
 
Protein sequence
MDLFLSDYAE IFENLFEGLY VVDRNRVIRR WNRAAEQLTG FTAEEMIGRR CEDNLLNHVD 
GHGRQLCISN CPLVEAMNEG QALENEVFLH HKDGHRMPVR VRINPLRDRC GEVVGATELF
VDMSEMSGIM QQVEDLKRQT LTDRLTGLPN RACLEGELQR SLDEYKRYGW PVGLFFMDID
HFKAVNDTYG HERGDDILRL VATTLAHNCR ASDIVGRWGG EEFVGLVRNA TTASLLQVAE
RSRMLVEQSF IMVDGRPLNV TLSVGAALVR EGESAAGLVR RADHLMFESK HKGRNCVSAD
V