| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0926 |
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| Symbol | |
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| ID | 3724145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 1091829 |
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| End bp | 1095020 |
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| Gene Length | 3192 bp |
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| Protein Length | 1063 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637750517 |
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| Product | sensory box protein |
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| Protein accession | YP_356349 |
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| Protein GI | 77918534 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCATAG ACATAAAATT TCACTTCCGA CATTTTCCCA TGAGGGTTGC CTTCGCCCTG
GCGGCCTTAT GCTTGCTTGC GATCCCTTGC GCCGCAAGCA ACATCCTGAT ACTGCATTCC
TACCACCGCG GTTATGCCTG GACCGACAGC ATCAAGGCGG GGATGGAGGA AATCCTCAAA
AAAGAGGTTC CCGAAGCGGA ACTTTTTGTG GAAAACCTGG ACACCAAACG CCATCCGCCC
GAACAGATTT TCGAGCGCCT GAAACAATTC CTTTCCAAAA AATACGCCGG AAAAATTTTC
GACATTATTT TGTGTTCGGA TGATAATGCC CTCGATTTTC TCATGGCTTA CCGGCAGGAG
TTGTTTCCCG GCGTGCCGGT GGTTTTCTGC GGTATCAACG ATTTTGACAC TGCACGCATC
GCCGACCACC AGGACATCAC CGGAGTGGCG GAAAATGTCG ACCTGGAAGG AACCCTGGCC
ATCGCGCTGC GCCTGCATCC GCAGACCCGC ACAGTCGCCG TCATAACGGA CATCACCCCC
TCCGGCCAGG CCAATCTGGC CAGGTTCCGC AGGATCATGC CCTATTTTCG AGACAGGGTG
GATTTCCTGA TGCTCGACGG CCTTAACGCC CCGGATCTGG AAAAAGCCCT GGCAAACCTG
CCTCCTCACA GCATCGTATT GAATTTGTTG TTTTTTCGCG ATGCCGGCGG ATGCATTCTT
ACCACAGCGC AAAGCAACCG CCTGATCACC CGAAACAGCA AATACCCCGT TTATGCGCCC
TGGGATTTTC TGGTCAACGG GGGAGTTGTC GGAGGTCATG TGGTCAGCGG CAAACGGCAG
GGGCAGGAGG CGGCACGTCT GGCCCTGCGC ATTCTGGACG GACAGGAACC GCGCCATATC
TTTCCCATCA CTCAAAGCCC CAATCTCTAC ATGTTCGACG ACAGGGCTCT GCAACATTTC
GGCATCGATC GGCACCAACT GCCCCAGGAC AGCATTATCC TCAACGATAT GTCTTCCGAA
CTTTCGGCTC ACAAACGGCA GGTCACTATC GCCCTGCTCA TCGCCGGCGT TTTTCTGTGC
CTCAGCTGCA CCCTTACCCT GATGATCATG CGTTATAAAA AAACGCTTCA GGCATTGCGC
CAGAGCGAGG GCACCCTTAA AGCCATGCTG GAGAGTATTG CCGATCCTAT CCACATGGTA
GACAGGGATC TGAACATCCT CTGGGCCAAT GATATCGCAA AGCAACTATT CGGAAAGAAC
CTTGTCGGAC AGAAATGTTA CGCGGCTTTG CACCGCAGTC CGACCCCTTG CGATCCGATG
TGTCATGCGA TCAAAGCCTT CAGCGACGGA CATGCCCATA GCAGCGAGAA CCTGTTTTTC
GACATCAACG ACGAAGAACG CTGTTTCCTG GTGACAGCCA ATGTCGCCTC CACAGACAGC
CAGGGCCAGC CCTCGGCAGT TTTGACCATC TCCCGGGATG TGACCGAAAT CAAAAAAACC
CAGCAGCAAT TTCACCAGGC CAAATGGTCC ATCGACGCTT CGCTGACGCC TATGCTCATG
GCCGATTTAC AGGGCCGGCT GACCTATGCC AATCAGGCGG CCCTTGACCT ATGGGGCTAT
GCTGGCGAGG AGGAGGTACT TGGCAAAAAC ATCGTGGAGT TTCAGGAAGA TCCGCAAAGA
ACCCGGATAA TTATGGAGAT TCTCAAAGCC CGGGGAGTCT GGCGTGGCGA AGGGAGGGGA
AAACAAAAAA ACGGCAACGG TTTCGATGTG GAACTGCAGG CGCAGGTGGT TAAAGACCAG
AATGGAGGGC CCTTATCCAT CCTGGCATCG GCCATCGACA TTACCGATAA AAGAAAAACC
GAACTGCAGA TCAAGAAACT GGCGTACTTC GACAGTCTGA CAGGGCTTCC CAACCGAACC
TTGCTTAAGG ATCATATGGA ACTGGCTCTC GGACAGGCCC GGCGACTCAA TAAATTCGTC
GCGGTGCTGC TGCTGGACCT GGACAACTTC AAGCACATCA ACGACACCCT TGGCCATGCG
ACAGGGGACC TGTTGATTCG ATCCGTAGCC GAAAGATTGC GTACCGAATG CCGCACCTGC
GACACTCTGG CCCGATGGGG CGGAGATGAA TTCGTGCTGT TGCTGACCGA CCTGGACGAC
ATACAGAACA CCACCAGCGC AACGGAAAAA TTTATGGCGT TGTTAACCGA AAGACCTTTC
GCGACGAGCG AATGCGATAT CAATACCACC GCCAGCATCG GTATCGCCCT TTACCCGCAG
GACGGTCAGG ATCCCGAAAC CCTCCTCAAG CGCGCGGATA CCGCCATGTA CGAGGCCAAG
AAAAACGGTC GCAACGGTTA CCACTTTTTC TCCCTGCAAC TGGCGGAACA GGCGGAACGA
CGTCACCGCA TGGAAATCAA CCTTCGAAGT GCCCTGAAGG AAGGAGAAAT GCAGCTCGTC
TACCAGCCGC AAATCGATCT GGGAAAAGTC AGAATCACCG GCATGGAAGC CCTGCTGCGA
TGGCAAAGCC CCGAGGAAGG CACAATTTCA CCGGCTCGCT TTATTCCCCT GGCGGAGGAG
ACCGGACTCA TCTATCCCCT GGGCGAGTGG GTCCTGCAGC AGGCCTGCCG TCAGGGAGCC
ATCTGGCAAA AGACCGAAGC GTCGCCGCTG TGCGTTGCGG TCAACCTCTC CGCCAAACAG
TTCCACCAGC CCGACCTGGC CAAAAACATC AAAAAAATAC TGCGGGAAAC CGGCCTGAGC
CCCCATCTGC TGGAACTGGA AATTACCGAA AGCGTCTTTC TGGAAAACAT GGAAGCCGCC
ATCGAGGCCC TTACCGAACT GAAGAAGCTC GGCGTTCAGT TTTCCATCGA TGATTTCGGT
ACCGGCTATT CCTCGTTGAG CTATCTGAAA AAACTCCCCA TAGACCGCAT TAAAATCGCG
CAGGAATTCG TCCGCGATAT CGATACGGAC GACGGCGACA AGGCCATTAT CAAAGCGACC
ATCGCCATGG CCAAAAGCCT TGGGATGAAA CTTATTGCCG AGGGCGTCGA AAACCATCAG
CAACTTGCGT TCTTGCTGTT GCACGGCTGT CATGCCATGC AGGGGTACTA CTTCGCCAAA
CCGATGCCCG CCCAAGAAGT ACCATCTTTC ATCCATTCGG AAACCTGCTT CAAGTTGGCA
CTGCAGGAAT AG
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| Protein sequence | MIIDIKFHFR HFPMRVAFAL AALCLLAIPC AASNILILHS YHRGYAWTDS IKAGMEEILK
KEVPEAELFV ENLDTKRHPP EQIFERLKQF LSKKYAGKIF DIILCSDDNA LDFLMAYRQE
LFPGVPVVFC GINDFDTARI ADHQDITGVA ENVDLEGTLA IALRLHPQTR TVAVITDITP
SGQANLARFR RIMPYFRDRV DFLMLDGLNA PDLEKALANL PPHSIVLNLL FFRDAGGCIL
TTAQSNRLIT RNSKYPVYAP WDFLVNGGVV GGHVVSGKRQ GQEAARLALR ILDGQEPRHI
FPITQSPNLY MFDDRALQHF GIDRHQLPQD SIILNDMSSE LSAHKRQVTI ALLIAGVFLC
LSCTLTLMIM RYKKTLQALR QSEGTLKAML ESIADPIHMV DRDLNILWAN DIAKQLFGKN
LVGQKCYAAL HRSPTPCDPM CHAIKAFSDG HAHSSENLFF DINDEERCFL VTANVASTDS
QGQPSAVLTI SRDVTEIKKT QQQFHQAKWS IDASLTPMLM ADLQGRLTYA NQAALDLWGY
AGEEEVLGKN IVEFQEDPQR TRIIMEILKA RGVWRGEGRG KQKNGNGFDV ELQAQVVKDQ
NGGPLSILAS AIDITDKRKT ELQIKKLAYF DSLTGLPNRT LLKDHMELAL GQARRLNKFV
AVLLLDLDNF KHINDTLGHA TGDLLIRSVA ERLRTECRTC DTLARWGGDE FVLLLTDLDD
IQNTTSATEK FMALLTERPF ATSECDINTT ASIGIALYPQ DGQDPETLLK RADTAMYEAK
KNGRNGYHFF SLQLAEQAER RHRMEINLRS ALKEGEMQLV YQPQIDLGKV RITGMEALLR
WQSPEEGTIS PARFIPLAEE TGLIYPLGEW VLQQACRQGA IWQKTEASPL CVAVNLSAKQ
FHQPDLAKNI KKILRETGLS PHLLELEITE SVFLENMEAA IEALTELKKL GVQFSIDDFG
TGYSSLSYLK KLPIDRIKIA QEFVRDIDTD DGDKAIIKAT IAMAKSLGMK LIAEGVENHQ
QLAFLLLHGC HAMQGYYFAK PMPAQEVPSF IHSETCFKLA LQE
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