Gene Pcar_0906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_0906 
SymboldppF 
ID3724164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand- 
Start bp1069989 
End bp1070981 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content61% 
IMG OID637750498 
Productputative ATP-binding component of dipeptide transport system 
Protein accessionYP_356330 
Protein GI77918515 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.0105903 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCACC TGCTCGAGGT CAAGAACCTG CGCAAAACAT TCCGGGTACC GGCCGGCCCC 
CTGGCTGCAG GACACCTGAC TCTCAAGGCT GTCGACGGGA TATCCTTTAA TCTGCGGGCC 
GGAGAAACTT TAGGGTTGGT AGGCGAGTCG GGCTGCGGCA AATCGACTAC CGGCAAAACC 
GTACTGCGGT TGCTGGAACC GGACAGCGGC GAGGTCTATT TCGACGGCGA GGACCTGCTG 
AGCCTCAAGA CAGGGCAGAT GCGCACCCGA AGACGGGATC TGCAGATGAT TTTTCAGGAC 
CCCTACTCTT CCCTCAATCC CCGTATGCAG GTCCTTGATA TTATCGGCGA GCCCCTGAAA 
ATCCACGGAC TGGCCAAAGG CCGGGCACTG CGCCAGGAGG TTGAGCGTCT ACTTGATACC 
GTAGGGCTCT CGGCAGCGCA CCTCGATCGG TACCCCCATG AATTCTCCGG TGGGCAACGT 
CAGCGTATCG GCATCGCCCG GGCCCTGGCG TTGAAGCCTC GATTGATTGT GGCCGACGAG 
CCGGTCTCGG CTCTCGACCT GTCCATCCAG GCGCAGGTGG TCAATCTGCT GCAGGACATT 
CAGCAACAAT TCGAGCTGAC CTATCTGTTT ATCGCCCACG ACCTGTCGGT CATCGAACAT 
ATCAGCGATC GCGTCGCCGT CATGTATCTT GGCCGCATCG TGGAACTGAC CCCCGCCGAG 
GAACTCTACA AGGCCCCACG GCACCCGTAC AGCGAAGCCT TGCTCAATGC GGTGCCTGTC 
CCCGACCCGC ATGTTCGCCG GCAGAAACGC CCCCTGGCCG GAGAAATCCC TTCTCCGCTC 
CACCCACCGG CCGGTTGCCA CTTTCACCCG CGCTGCCCCT ACGCCCAGGA AAAATGCCGC 
CAGCAGGCTC CCGAGCTGAC CGACCAGGGC GGCGGCCACC TGGCCGCATG CCATTTCAGC 
GACCAGGTCG GACGTTATCG TATTGCGCGT TGA
 
Protein sequence
MTHLLEVKNL RKTFRVPAGP LAAGHLTLKA VDGISFNLRA GETLGLVGES GCGKSTTGKT 
VLRLLEPDSG EVYFDGEDLL SLKTGQMRTR RRDLQMIFQD PYSSLNPRMQ VLDIIGEPLK 
IHGLAKGRAL RQEVERLLDT VGLSAAHLDR YPHEFSGGQR QRIGIARALA LKPRLIVADE 
PVSALDLSIQ AQVVNLLQDI QQQFELTYLF IAHDLSVIEH ISDRVAVMYL GRIVELTPAE 
ELYKAPRHPY SEALLNAVPV PDPHVRRQKR PLAGEIPSPL HPPAGCHFHP RCPYAQEKCR 
QQAPELTDQG GGHLAACHFS DQVGRYRIAR