Gene Pcar_0816 details

Gene Information

• Locus tag: Pcar_0816
• ID: 3723097
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: +
• Start bp: 963322
• End bp: 964029
• Gene Length: 708 bp
• Protein Length: 235 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637750410
• Product: ABC-type transport system, ATPase component
• Protein accession: YP_356243
• Protein GI: 77918428
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 96
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTATCT CCGACCCCTT GATTCGGCTG ACCGGCATCA CCAAGACCTA CGGTAGCGGA 
CAGGCCGCTT TTCAGGCCCT GAAAGGTATC GATCTCTCTA TCGAAAGCGG TGATTTTGTC 
GCCATTATGG GACACAGCGG GTCCGGGAAG TCCACGACCA TGAACATTCT CGGATGCCTC 
GATACGCCCA CTGGCGGCAG TTACGAGTTT CAGGGGGTAC ACGTCGAGCG CTTGTCGCGC 
AATCAGCGCG CACTGTTGCG GCGGTACTTT CTTGGCTTCG TATTTCAGGG CTTCAACCTG 
TTGTCACGCA CCACGGCACT GGAGAATGTC GAATTGCCCC TCATCTACCG TGGGGAACCG 
GCGGCAGCCC GCCATGCCGC TGCCCGCGCA GCCCTGGCGC AGGTGGGCCT GCAGGGTTGG 
GAACAGCACA CGCCGGCGGA ACTGTCCGGG GGCCAGCAGC AGCGCGTCGC CATCGCCCGA 
GCCATCGTGT CCCGCCCCAA GGTTTTGCTG GCCGACGAAC CTACCGGTAA TCTCGATACG 
CGAACCAGTG AGGAAATCAT GGACCTGATC GGTAACTTCA ACCGGGAACA CGGCATTACC 
GTGCTCATGG TTACTCACGA ACCTGAGATG GCCGAGTATG CCAAACGCGT CGTCAATTTC 
GTTGATGGCA AGGTGGAAAG CGATAGCTGT AACGGGGAGG TGTCCTGA 

 

Protein sequence

MSISDPLIRL TGITKTYGSG QAAFQALKGI DLSIESGDFV AIMGHSGSGK STTMNILGCL 
DTPTGGSYEF QGVHVERLSR NQRALLRRYF LGFVFQGFNL LSRTTALENV ELPLIYRGEP 
AAARHAAARA ALAQVGLQGW EQHTPAELSG GQQQRVAIAR AIVSRPKVLL ADEPTGNLDT 
RTSEEIMDLI GNFNREHGIT VLMVTHEPEM AEYAKRVVNF VDGKVESDSC NGEVS