Gene Pcar_0716 details

Gene Information

• Locus tag: Pcar_0716
• Symbol: rplF
• ID: 3723305
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: +
• Start bp: 859854
• End bp: 860393
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 637750307
• Product: 50S ribosomal protein L6
• Protein accession: YP_356145
• Protein GI: 77918330
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 0.00767728
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTAGAA TTGGGAAAAA GCCCATCGAC ATTCCCAAGG GCGTTACGGT GTCTCTGGCC 
GGAGACACGG TCACTGTAAA AGGGCCCAAA GGGGAACTGA CTAGGAATAT TGTTGCAGGG 
ATACGTTTGG AAACCGCCGG TGACCAGATT CTGGTTCAGT GCGAGAAGGA AGGTAAGCAG 
GAGGGCGCCT ATCGGGGCCT GGTGCGAGCC CTTGTCGCCA ATATGGTTGA AGGTGTGACC 
AACGGCTTTG AACGTGTTCT TGAAATCAAC GGCGTCGGCT ACCGTGCCGA AGTCAAGGGA 
AGTGCACTTA ATCTGTCTCT CGGGTATTCG CATCCGATTG AATATGCACT GCCTAAAGGG 
ATCTCTGCCG AGGTCGAAAA GCAGACTAAG ATCATTGTTC GCGGCATCGA CAAAGAACTG 
GTTGGAGCGA CCGCAGCTAA AATTCGTTCT TTCCGGAAAC CTGAGCCCTA TAAGGGCAAG 
GGCGTCAAGT ATGCCGAGGA ACGTATCGTG CGTAAGGCTG GTAAGGCAGG GAAAAAATAA 

 

Protein sequence

MSRIGKKPID IPKGVTVSLA GDTVTVKGPK GELTRNIVAG IRLETAGDQI LVQCEKEGKQ 
EGAYRGLVRA LVANMVEGVT NGFERVLEIN GVGYRAEVKG SALNLSLGYS HPIEYALPKG 
ISAEVEKQTK IIVRGIDKEL VGATAAKIRS FRKPEPYKGK GVKYAEERIV RKAGKAGKK