Gene Pcar_0701 details

Gene Information

• Locus tag: Pcar_0701
• Symbol: rplC
• ID: 3723386
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: +
• Start bp: 853236
• End bp: 853868
• Gene Length: 633 bp
• Protein Length: 210 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637750292
• Product: 50S ribosomal protein L3
• Protein accession: YP_356130
• Protein GI: 77918315
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.000000000481863
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGAAGG GAATTTTGGG TAAGAAGCTG GGCATGACCC AGGTCTTTGC TGTCGACGGG 
AAGTGTATCC CTGTGACAGT TGTTGAGGCA GGGCCTTGTG TAGTTCTGCA GAAAAAGACC 
GAGGAAAAAG ACGGCTACAA TGCCCTTCAA CTCGGGTTTG GGGCCAAAAA GACTCAGTCT 
GTTAACAAGC CGGCTATGGG CCACTTCAAA AAGTCCGGCA AGGGTGCATT CGAATTCCTG 
CGGGAAGTTG AGTGCGAAAA TATTGATGAC CACGCAGTGG GCGACGAAAT TACCTGTGAC 
GGATTCTTTG CTACCGGTGA CGTTATCGAT GTAACCGGCA CCAGCAAAGG TAAAGGTTTT 
CAGGGCGTCA TCAAGCGGTG GAATTTTGCA GGGGGCCGTG CCAGTCATGG TTCCATGTTT 
CACCGCCGCC CCGGTGGTAT CGGCGCAAGT GCTTGGCCTT CCCGTGTTTT CAAGGGTAAG 
AAGATGGCGG GGCAGATGGG CAACAAGCGT GTGACCACCC AGGGACTGGA AGTGGTCGAT 
GTTCGTCCCG AAAAGAGCCT TGTTCTTATT AAGGGGGCCG TACCGGGGCC TGTTAACGGC 
CTGCTGCTCA TCCGGAAAAG CCGCAAGGTT TGA 

 

Protein sequence

MTKGILGKKL GMTQVFAVDG KCIPVTVVEA GPCVVLQKKT EEKDGYNALQ LGFGAKKTQS 
VNKPAMGHFK KSGKGAFEFL REVECENIDD HAVGDEITCD GFFATGDVID VTGTSKGKGF 
QGVIKRWNFA GGRASHGSMF HRRPGGIGAS AWPSRVFKGK KMAGQMGNKR VTTQGLEVVD 
VRPEKSLVLI KGAVPGPVNG LLLIRKSRKV