| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0695 |
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| Symbol | rpoC |
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| ID | 3723380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 844349 |
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| End bp | 848539 |
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| Gene Length | 4191 bp |
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| Protein Length | 1396 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637750286 |
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| Product | RNA polymerase, beta prime subunit |
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| Protein accession | YP_356124 |
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| Protein GI | 77918309 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000000131874 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGAAGATA TTTTCAGCCT TTTCGAGCGG CCGAAGGATC CTCTTAGCTT TAATGCCATT
CGTCTCTCAC TTGTCTCTCC CGAAAAGATC CGTGAAAGAT CCTTTGGTGA GGTCAAAAAG
CCCGAGACGA TCAACTACAG AACCTTTAAA CCGGAACGTG ACGGTCTTTT CTGCGCCAAG
ATTTTCGGGC CGACTAAAGA CTACGAATGC AACTGCGGTA AGTACAAGCG CATGAAGCAT
CGTGGCATCG TCTGCGAAAA ATGCGGCGTT GAAGTCATTC CTAGCAAAGT GAGGCGCGAG
CGTCTTGGCC ATATCGACTT GGCCTGCCCC GTGGCCCACA TCTGGTTTCT GAAATCGTTG
CCGTCGCGTA TTGCGACGCT TCTCGACATG ACCTTGAAAG AAGTCGAGCG GGTTCTGTAT
TTCGAAGCCT ATCTGGTTCT CGATGCCGGC GATACACCGC TGTTTCGTGG GCAATTGCTG
ACCGAAGACA AATATGCCGA AACCATGGAA GAATACGCCG GTCAGTTTGT GGCTACCATG
GGTGCCGAGG CTATTCGCGA CTTCCTTCTG AGTATAGACA TCGAAGAGTT GTCCACTGTC
TTGCGTAAAG AAATGAGTGA GGCAGCCAGT GAGGCCAAGC GCAAAAAGGT CGCTAAAAGG
CTCAAAGTTG TCGAGGCTTT CAAGTTCAGC GGGAACCGTC CGGAGTGGTT GATCCTTGAA
ACCATCCCGG TTCTGCCTCC CGAATTACGC CCCCTGGTAC CTCTGGATGG TGGCCGTTTT
GCCACATCGG ATCTCAACGA TCTGTACCGC CGCGTGATTA ACCGTAATAA CCGCCTTAAG
CGTTTGATGG AATTAAGGGC CCCCGAGGTC ATTATTCGCA ACGAAAAACG CATGCTGCAG
GAAGCGGTCG ATGCGCTGTT CGATAACGGT CGTCGCGGGC GTGCCATTAC GGGTCCGAAC
AAGCGGCCTT TGAAGTCTTT ATCCGATATG CTCAAGGGCA AAGGCGGACG GTTCCGGCAG
AATCTGCTCG GAAAGCGTGT TGACTATTCC GGGCGATCGG TTATCGTTGT TGGCCCGGAG
CTCAAACTGC ATCAATGCGG TTTGCCCAAA AAAATGGCTC TGGAGCTGTT CAAGCCGTTT
ATCTACAACA AACTTGAAGA GCGCGGATTC TGCACCACCA TCAAGAGCGC CAAGAAGATG
GTGGAGAAGG AAAAATCCGA AGTCTGGGAC GTTCTCGAGG AAGTCATAAA AGAACATCCG
GTTATGCTGA ACCGGGCACC GACTCTGCAC CGTCTCGGCA TTCAGGCCTT TGAACCGGTG
CTTATAGAAG GCAAGGCTAT TCAGTTGCAC CCCCTCGTTT GTACGGCTTT CAACGCCGAC
TTCGACGGTG ACCAGATGGC TGTGCATTTG CCGCTGTCCA TAGAGAGTCA GATCGAGACC
CGGGTGTTGA TGATGTCGAC CAACAACATC CTTTCGCCGG CGCATGGTAA GCCTATTATC
GTTCCATCGC AGGATATGAT TCTGGGTCTC TACTATATGA CCAGGGAGCG TGCCTTTGCG
CGCGGTGAGG GTAAGATTCT CTCTTCGCGC GATGAGCTGC GCATGGCCTA CGATGCCGGG
GAGATTGACC TTCAGGCCAA GATCAAGGTT CGGATGTCGC CTGCTCTCGG TGAGCCGGAG
ACCCTTGTTG AAACGACCAC CGGGCGTGTT TTGCTGCGGG ATGTTGTACC GGAAGTCATT
CCGTTTGATT ACATCAATGT GGTTATGGCC AAAAAGCACG TGGCCAACCT TATCGATGTA
TGTTTCCGTC TTGCCGGAAA CAAAGAAACG GTTTTGCTGG CCGATAAGCT CAAGGATACC
GGGTATCGTT TCTCCACCAT GGCCGGTATT TCAATCTGCC TCGATGACAT GGTCATTCCG
GAATCGAAAG ATGTCCTGAT GAAGGCCGCC GTCGAGGAGG TTACCGAAAT TCAGAAACAA
TATACCGAAG GTCTCATCAC CGACGGTGAA CGCTATAACA AGGTCATCGA TATCTGGGCC
AAGTGTACCG AAGATATCGC CCAGACCATG TTGGACACCC TTTCGAAAGA TGAAATCGTC
TCTCCGGAGG GGGAAGCCGT CAAGGTGCCG TCCTTCAACT CGATCCATAT GATGGCCGAT
TCCGGTGCCC GTGGTAGCGC CCAGCAGATC CGTCAGTTGG CGGGTATGCG TGGTTTGATG
GCGAAACCTT CCGGTGAGAT CATCGAAACG CCGATTACCG CCAACTTCCG TGAAGGTCTG
ACCGTGTTGC AGTACTTCAT TTCGACTCAC GGTGCCCGTA AGGGTCTGGC GGATACCGCG
CTCAAAACGG CTAACTCCGG GTATCTTACC CGTCGTTTGG TCGATGTCGC TCAGGACGCC
ATCATCACGG AACAGGATTG TGATTCACTG GATGGCATCG TGATGACGGC TCTTACTGAA
GGCGGGGAAG TTATCGAACG TCTGGGGGAT CGCATCCTCG GCCGTACCGC TCTTGAGGAT
GTGCTGGATC CCGTTACCGG CGAGGTGCTG GTCGAGGCAA ACCAGCAAAT CGACGAAACT
CTGGTGGAAA AAATCGAAAA TGCCGGTATC GAAAAGGTGA AGATCCGTTC GGTCTTGACC
TGCCAGAGCC AGCGCGGTAT TTGCGCCACC TGTTATGGGC GCGATCTGGC CAGAGGGCAT
CTGGTCAATC TCGGTGAGGC GGTCGGGGTT ATCGCCGCTC AGTCTATCGG CGAGCCTGGT
ACTCAGCTTA CCATGCGTAC CTTCCATATC GGTGGTACGG CCTCCCGGCG TGCCGAGCAG
ACCTCCTTGG AGGCACGGTT CGATGGTTTC GTAAAATACC TGAATCTCAA TTCGGTTCTT
GATGCCGAAG GATTTCACGT GGTCATGAAT CGCAACGCCG AAATTGCGGT GGTGGATGAG
ACCGGGCGTG AACGCGAACG CTACGGCGTG GTTTACGGTG CGCGTCTGCG CATCAATCCC
GATGCGCCGG TTCAGGCCGG TAGCCTGCTC GCTGAATGGG ATCCGTATAC CATGCCTATC
CTGACGGAAA TTGCCGGTAC GGTGCGTTTC GGCGATATTC TCGAAGGGGT GTCCATGGAG
GAACAGGTCG ATGAAGTAAC CGGCCTGTCT CGTAAAGTCG TCATCGAATC GAAGGGGGCA
GACAAACGGC CGCGGATTAC TCTCAAGGAC TCCGAAGGTA AGACCGCTAA GTTGCCCAAC
GGAGCTCCCG CCCGGTACAT GCTGCCGGTC GGAGCGATTA TTGTTGCCTC TGAGGACGAA
ACGGTCAGCG GTGGTGCCAT TCTCGCAAAA ATCCCGCGTG AAACCACCAA AACCAAGGAT
ATCACCGGGG GTCTTCCGCG CGTAGCCGAA TTGTTTGAGG CACGCAAGCC TAAAGAGTAC
GCCATCATCT CCGAAATCGA TGGTGTGGTC TCGTTTGGCA AGGACTCCAA AGGGAAGCGC
AAGGTACACG TTACCCCTGA AGTCGGCTCT CCTAAGGAAT ATCTCATTCC CAAAGGGAAG
CATATCAGCG TGCACGAAGG GGATCACATC AAGGCCGGCG AGGCACTTAT GGACGGCTCG
AGCAACCCCC ACGATATTCT GCGCGTCCTC GGTGAAAAGG AACTTGCCAA GTACCTGGTG
GATGAAGTGC AGGAGGTTTA TCGCCTGCAG GGCGTAAAGA TCAATGACAA GCACATCGAG
GTCATTGTTC GCCAGATGTT GCGTCGAGTG CGGATCAAGG AGCCCGGCAA CACCCGGTTC
CTCGCCGATG ATCAGGTTGA GCGCTGGGAG TTCGAGTGCG AAAACCGCAA GGTTGTCGGT
GAGGGCGGTG CTCCTGCAGT CGGGGAGCCC CTCATGCTGG GTATAACCAA GGCGTCGCTG
TCGACCGAGT CCTTTATTTC CGCGGCGTCG TTCCAGGAGA CAACCAAGGT CTTGACTCAG
GCTGCTATCG AAGGCAAGAT CGACTACCTT CGCGGGTTGA AGGAAAACGT CATCATGGGG
CGTCTTATCC CTGCCGGTAC GGGTATTTCC AAGTATCGCA GTGCCCACTT GCTGATTGAA
GAACCCGAGG AAATTGAAGA GCCTGTGCCT GAAGATCTGG AAGATGAAAC CGCTGGTGCA
GACAGTGCCC AAGCGGCTTC CGAAGAGTCG GTGGCGGAAG GCAAAGATTG A
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| Protein sequence | MEDIFSLFER PKDPLSFNAI RLSLVSPEKI RERSFGEVKK PETINYRTFK PERDGLFCAK
IFGPTKDYEC NCGKYKRMKH RGIVCEKCGV EVIPSKVRRE RLGHIDLACP VAHIWFLKSL
PSRIATLLDM TLKEVERVLY FEAYLVLDAG DTPLFRGQLL TEDKYAETME EYAGQFVATM
GAEAIRDFLL SIDIEELSTV LRKEMSEAAS EAKRKKVAKR LKVVEAFKFS GNRPEWLILE
TIPVLPPELR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLMELRAPEV IIRNEKRMLQ
EAVDALFDNG RRGRAITGPN KRPLKSLSDM LKGKGGRFRQ NLLGKRVDYS GRSVIVVGPE
LKLHQCGLPK KMALELFKPF IYNKLEERGF CTTIKSAKKM VEKEKSEVWD VLEEVIKEHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCTAFNAD FDGDQMAVHL PLSIESQIET
RVLMMSTNNI LSPAHGKPII VPSQDMILGL YYMTRERAFA RGEGKILSSR DELRMAYDAG
EIDLQAKIKV RMSPALGEPE TLVETTTGRV LLRDVVPEVI PFDYINVVMA KKHVANLIDV
CFRLAGNKET VLLADKLKDT GYRFSTMAGI SICLDDMVIP ESKDVLMKAA VEEVTEIQKQ
YTEGLITDGE RYNKVIDIWA KCTEDIAQTM LDTLSKDEIV SPEGEAVKVP SFNSIHMMAD
SGARGSAQQI RQLAGMRGLM AKPSGEIIET PITANFREGL TVLQYFISTH GARKGLADTA
LKTANSGYLT RRLVDVAQDA IITEQDCDSL DGIVMTALTE GGEVIERLGD RILGRTALED
VLDPVTGEVL VEANQQIDET LVEKIENAGI EKVKIRSVLT CQSQRGICAT CYGRDLARGH
LVNLGEAVGV IAAQSIGEPG TQLTMRTFHI GGTASRRAEQ TSLEARFDGF VKYLNLNSVL
DAEGFHVVMN RNAEIAVVDE TGRERERYGV VYGARLRINP DAPVQAGSLL AEWDPYTMPI
LTEIAGTVRF GDILEGVSME EQVDEVTGLS RKVVIESKGA DKRPRITLKD SEGKTAKLPN
GAPARYMLPV GAIIVASEDE TVSGGAILAK IPRETTKTKD ITGGLPRVAE LFEARKPKEY
AIISEIDGVV SFGKDSKGKR KVHVTPEVGS PKEYLIPKGK HISVHEGDHI KAGEALMDGS
SNPHDILRVL GEKELAKYLV DEVQEVYRLQ GVKINDKHIE VIVRQMLRRV RIKEPGNTRF
LADDQVERWE FECENRKVVG EGGAPAVGEP LMLGITKASL STESFISAAS FQETTKVLTQ
AAIEGKIDYL RGLKENVIMG RLIPAGTGIS KYRSAHLLIE EPEEIEEPVP EDLEDETAGA
DSAQAASEES VAEGKD
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