| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0694 |
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| Symbol | rpoB |
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| ID | 3723379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 840144 |
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| End bp | 844250 |
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| Gene Length | 4107 bp |
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| Protein Length | 1368 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637750285 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_356123 |
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| Protein GI | 77918308 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.46808 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTATT CGGTTGCGAA TAACCAGCTT CTTAGGAAAC ATTTTAGCAC GATTAAGGGA
ATCATCGAGA TTCCTAACTT GATCGATATC CAGAAGAATT CCTACAAGCG TTTCCTGCAA
GCAGGGCTCC CTCCTTCTGC TCGGAAAAAT ATCGGGCTTG AAGCGGTTTT TCGCTCGGTT
TTCCCCATTC GCGATTTTAG CGAAACCTGC TCATTGGACT ACGTTTCGTA CTCTCTGGGT
ACGCCTAAGT ACGATGTGGG TGAGTGCCAC CAGCGAGGGA TGACCTTTGC CGCTCCCGTT
AAGGTATGCG TGCGTCTTGT GTCTTGGGAT GTCGACAAGG AATCCGGAGT CCAGGCGATA
CGCGACATAA AAGAGCAGGA AGTCTATTTT GGCGAGATCC CTTTAATGAC CGAAAACGGT
ACCTTTATCA TCAATGGTAC CGAACGCGTT ATCGTGAGCC AGTTGCATCG TTCTCCCGGT
GTGTTTTTTG ATCATGATAA AGGCAAGACT CATTCGAGCG GCAAGATTCT TTATAATGCT
CGAGTGATCC CGTATCGTGG TTCCTGGCTC GATTTTGATT TTGATCATAA AGATCTCCTT
TATGTCCGGA TTGACCGCAG GCGGAAACTT CCCGCAACGG TTCTGCTTAA AGCTCTCGGT
TACAGTGCCG AAGAGTTGTT GAATTACTAT TATCAGGTGG AGACCGTTAC GGTAGACGGG
GACTCCTTCA AAAAAAAGGT CAATCTCGAC CTTCTTGCGG GTCAGCGTGC CTCGACCGAT
GTGCTCGGCA ATGATGGGGA AATTATCGTC AAGGCCAACC GCAAGTTCAC CAAAGCGGCT
ATTCGCAAGC TTGCCGACAG CAATGTAGAG TATATCCCGG TTTCTGAAGA GGAAATCGTC
GGCAAGGTTG CTTCCACTGA TATTGTTGAT GTCAGCACCG GCGAGGTCAT TGTTGAATGC
AATGAGGAAA TCAGCGAGAG CAAGCTCGAA GAGTTGCGCA CGCGAGGCAT TGTTGAGTTC
AACATCCTGT TTATCGATCA TCTCCATGTA GGGCCCTACC TGCGGGAGAC GCTGTTGCTG
GATCGCATGG CTACTCCCGA GGATGCCCGC ATCGAGATCT ACAGGCGTCT GCGTCCAGGA
GATCCGCCGA CCATAAAGAG CGCTAATGCG CTTTTTGAAA GCTTGTTCTT CAACCCTGAG
AGATATGATC TTTCGGTGGT CGGACGTATC AAACTGAACT ACAAGTTGGG GCTTCAATCG
CCTGAAGATC AGACCACGCT CACCAAGGAT GATATCCTCG AAGTCGTTCG CTATCTCATC
GGTCTGCGCG ATGGGCGCGG TACCATTGAT GATATCGATC ATCTTGGGAA TCGTCGCGTG
CGCGCAGTGG GCGAACTGCT GGAAAATCAA TACCGTGTCG GCCTGGTGCG GATGGAGCGG
GCGATTAAGG AGCGCATGAG TCTGCAGGAA GTCGACAGCC TGATGCCTCA CGATCTGATC
AATTCCAAGC CTGTTTCGGC AGTGGTCAAG GAGTTCTTCG GGTCATCTCA GTTGTCCCAG
TTTATGGATC AGACCAATCC TTTGTCTGAA ATTACCCATA AACGACGTCT TTCGGCTCTG
GGACCCGGTG GTCTTACCCG TGAGCGTGCC GGTTTTGAGG TGCGCGACGT TCATCCGACC
CATTATGGAC GTGTCTGTCC GATTGAGACG CCTGAAGGTC CCAATATCGG TTTGATCGCG
TCCCTGTCAA CCTATGCGCG GATCAACGAG CATGGATTCG TTGAGACTCC CTACAGGATC
GTTGAGCAGG GGAAGGTTAC CAACGAAATC CGGTATTTTT CGGCTTTGGA AGAGGGCGGC
CACGCCATCG CTCAGGCCAA CGCGCCTTTG GATGACGACG GACGCTTCCT CAACGAATTG
GTCAACGCGA GACAGAACGG CGAATTCGTG CTTATTCAGC GCGAAGAAAT CGGCCTTATG
GACGTTTCGC CCAAGCAGCT CGTTTCGGTT GCCGCCTCGC TGATCCCGTT TTTGGAAAAC
GATGATGCCA ACCGTGCGTT GATGGGGTCG AACATGCAGC GCCAGGCGGT TCCCTTGCTG
CGCGCCGATG CACCGCTGGT CGGTACCGGT ATGGAACGTA TTGTCGCTCA CGACTCCGGG
GCCGCCGTAG TTGCGCGCCA TAACGGTGTC GTTGAGTCGG TTGATGCATC GCGAATTGTT
GTGAAGATTG ACGAAGGCGA AGTGGATGAA GACGGAACCG GCGTTGATAT TTACAATCTG
ATCAAATTCG CCCGGTCGAA TCAGAACACC TGCTTGAATC AGAAACCGAT CGTCAAGGTC
GGTGACCGGG TTGCCAGCGG CGGTATCATC GCAGATGGTC CCTCCACGGA ATGGGGTGAA
CTGGCTTTGG GGCAAAACGT GCTGGTCGCG TTTATGCCCT GGGAAGGTTA CAACTTCGAA
GATTCGATCC TGATTTCTGA AAAGCTGGTC AAGGAAGATC GCTATACTTC CATCCACATC
GAGGAATTGG AATGTGTAGC GAGGGATACC AAGCTGGGTA AGGAAGAGAT CACCAACGAT
ATCCCCAATC TTGGCGAGGA CGCCCTTAAG GACCTTGACG AAAGCGGTAT TGTTCGTATC
GGTGCCGAAG TCAAGCCCGG TGACATCCTG GTTGGTAAAA TCACGCCTAA AGGCGAAACC
CAACTGTCTC CCGAAGAAAA ACTGCTGCGT GCAATTTTCG GGGAGAAAGC CGGCGATGTT
CGCGACACGT CCTTGAGGCT TCCGCCCGGC GTGGAAGGTG TGGTTATCGG CGCTCGGGTC
TTTTCCCGTA AGGGTTCGGA CAAGGACAGC CGTACCGAAT ATATCGAAAA GACCGAAATT
GAAAAACTGC TCAAGGATCA ACACGATGAG ATTCGCATTA TACGCGAATC GACCCATGGC
AAACTTGAGT CGCTTCTGGT AGGCCAGACC TCAGCCTCCG CGTTGTTCGA TGCCGCAGGC
AAAGAACTGC TCGGGCAGGG GGAGAAGATT ACCAGTGAAG TGTTGGCCGA GGTGCCCTTT
GCGCGCTGGC GTGAAATCAG CCTGCTGGAT GCCTCCGAAA ACGAAGAAAA GTTGAGTGCC
ATCATGACCA GTCTTGCTCA GCGCGAAGAG CTGATCAAGG CCGTGTTTGC CGATAAGATC
GAAAAGATAA AACGCGGAGA CGACCTGCCG CCTGGTGTCA TCAAAATGGT CAAGGTCTAT
ATCGCCATCA AGCGCAAATT GTCGGTTGGT GACAAGATGG CTGGCCGTCA CGGTAATAAG
GGTGTCCTGT CCAGAGTGTT GCCTGAAGAG GATATGCCTT ATATGGCCGA TGGCACTCCG
GTTGAAATTG TCCTCAATCC GCTCGGCGTT CCTTCGCGTA TGAACGTCGG GCAGATCCTC
GAAACACATC TGGGACTTGC CGCTAGAGGT CTCGGGGTTC AGATTCAGGA GCATCTGGAT
CGTTATTACA CCCCCGAGGC GATGCGTACC AAGATCGGCG AGTGTTATGA GGATGATCGG
GTCGCCGAGT TCGTCGATGC CCTTCCGGAC GACGAGGTTA TGCAGCTTGC GCGTCAATTA
TCGCGCGGGG TGCCCATGGC TTCGCCCGTC TTCGAAGGGG TCACCGAAGA GCAGATGAAA
AACCAGATGG AGCGGGCCGG CTTCGCATCC AGCGGGCAGA TGACCTTGTA CAACGGTAAA
ACCGGCGAAG CTTTCAAGGA GAAGGTCACC GTCGGTATCA TGTATATGCT TAAATTGCAT
CACTTGGTCG ACGATAAAAT TCATGCACGT AGTATCGGCC CTTACAGTCT TGTGACCCAG
CAGCCTCTAG GCGGCAAGGC GCAATTCGGT GGACAGCGTC TTGGTGAGAT GGAAGTCTGG
GCCATGGAAG CTTACGGTGC CGCTCATGCG CTGCAGGAGT TTTTGACCGT CAAGTCCGAC
GATGTCACCG GGCGTACGCG CATGTACGAG GCTATCGTCA AGGGTAAACA TACTCTTGAG
GCCGGATTGC CCGAGTCGTT CAATGTCCTC ATCAAGGAAC TGCAGTCCCT TTGTCTGGAT
GTCGAACTCC TTGAGGAGCA GGAATAA
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| Protein sequence | MAYSVANNQL LRKHFSTIKG IIEIPNLIDI QKNSYKRFLQ AGLPPSARKN IGLEAVFRSV
FPIRDFSETC SLDYVSYSLG TPKYDVGECH QRGMTFAAPV KVCVRLVSWD VDKESGVQAI
RDIKEQEVYF GEIPLMTENG TFIINGTERV IVSQLHRSPG VFFDHDKGKT HSSGKILYNA
RVIPYRGSWL DFDFDHKDLL YVRIDRRRKL PATVLLKALG YSAEELLNYY YQVETVTVDG
DSFKKKVNLD LLAGQRASTD VLGNDGEIIV KANRKFTKAA IRKLADSNVE YIPVSEEEIV
GKVASTDIVD VSTGEVIVEC NEEISESKLE ELRTRGIVEF NILFIDHLHV GPYLRETLLL
DRMATPEDAR IEIYRRLRPG DPPTIKSANA LFESLFFNPE RYDLSVVGRI KLNYKLGLQS
PEDQTTLTKD DILEVVRYLI GLRDGRGTID DIDHLGNRRV RAVGELLENQ YRVGLVRMER
AIKERMSLQE VDSLMPHDLI NSKPVSAVVK EFFGSSQLSQ FMDQTNPLSE ITHKRRLSAL
GPGGLTRERA GFEVRDVHPT HYGRVCPIET PEGPNIGLIA SLSTYARINE HGFVETPYRI
VEQGKVTNEI RYFSALEEGG HAIAQANAPL DDDGRFLNEL VNARQNGEFV LIQREEIGLM
DVSPKQLVSV AASLIPFLEN DDANRALMGS NMQRQAVPLL RADAPLVGTG MERIVAHDSG
AAVVARHNGV VESVDASRIV VKIDEGEVDE DGTGVDIYNL IKFARSNQNT CLNQKPIVKV
GDRVASGGII ADGPSTEWGE LALGQNVLVA FMPWEGYNFE DSILISEKLV KEDRYTSIHI
EELECVARDT KLGKEEITND IPNLGEDALK DLDESGIVRI GAEVKPGDIL VGKITPKGET
QLSPEEKLLR AIFGEKAGDV RDTSLRLPPG VEGVVIGARV FSRKGSDKDS RTEYIEKTEI
EKLLKDQHDE IRIIRESTHG KLESLLVGQT SASALFDAAG KELLGQGEKI TSEVLAEVPF
ARWREISLLD ASENEEKLSA IMTSLAQREE LIKAVFADKI EKIKRGDDLP PGVIKMVKVY
IAIKRKLSVG DKMAGRHGNK GVLSRVLPEE DMPYMADGTP VEIVLNPLGV PSRMNVGQIL
ETHLGLAARG LGVQIQEHLD RYYTPEAMRT KIGECYEDDR VAEFVDALPD DEVMQLARQL
SRGVPMASPV FEGVTEEQMK NQMERAGFAS SGQMTLYNGK TGEAFKEKVT VGIMYMLKLH
HLVDDKIHAR SIGPYSLVTQ QPLGGKAQFG GQRLGEMEVW AMEAYGAAHA LQEFLTVKSD
DVTGRTRMYE AIVKGKHTLE AGLPESFNVL IKELQSLCLD VELLEEQE
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