| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0677 |
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| Symbol | |
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| ID | 3724017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 822657 |
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| End bp | 825500 |
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| Gene Length | 2844 bp |
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| Protein Length | 947 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637750263 |
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| Product | sensory box/GGDEF family protein |
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| Protein accession | YP_356106 |
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| Protein GI | 77918291 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000000825914 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTGGC GCAATGCCCT GGTTGTCGTT TTTACAATAT GTTTATTGAT GCCGTATGCA
GCTTGGGCGC GGGATGCAAA GGTTTTGATC CTCCATTCCT ATCATGCGGG GTTTGCCTGG
ACCGATGATC AGCAGCAAGG ATTTCTCGAG GCTCTCAAAG GCAGCGATGT CGTAGGGCAG
GTGGCTTTGC GCGTTGAATA TCTCGATGCC AGCCCCGGGG GAGATCAAGC GGACCTGCAG
GAGTCTTTCT ATACCTACCT GAAGACCAAA TATACGCGTT TCATCCCTGA CCTGATCTAT
GCGACGGATG ATGAAGCCGT AGCTTTTCTT GAGCGTTATC GCCGCAGGTT GTTTCCCTCC
ACTCCGGTCG TATATAGCGG TCTCGACGAT CTGGCTCTGG ACAAACGCCT CGACCAGCAG
GCCTTTCAAG GGGTTTTCGA GCTGAAAGAT GTTGCGGGCA GCATCGCTCT TGCGATGCAT
CTGGAACCGA CCCTGAGAAC CTTGTTTTTC ATTGGCGATG ATTCGGCTGC AGCCCAAGGT
ATAAAAGGCC GTGTAGAAAA AGAGGCCGCA AAAGTTTCAC CGGACATCGA AGTCGTTTTT
TATAACAGCG CGTCTGTGGA GGCCATTGAA GCCTTTCTGG GCAACATGCA GCCGAAATTG
CTGGTGGTAA GTTCTCTCGA GGGCGTGTAC GACGCACAGG GGAACCGGGT CGCCCTGCAT
GACACCCTGC AGCGTCTGAA TGATGTCGGC AGATTCAAGA TTTTGGCCAT GAAAGACATT
TATCTGACCT CCGGAGCGCT TGGCGGCGCG GTTAACCGAG GCCGGGAACA GGGGGGGCAG
GCCGGTTATC TGGCCCGTGA GCAGGTTTTT AATGAAACTA ATGCCGATAA TGAATCCCTG
TATGAAGTGG TTTCCACGTC TTATATGTTC GATTATCGAC AGATGCAGCG ATTTGGGCTG
GCGTCCGTCG ATCTGCCGCC TGGCAGCACC ATCGTCGGGC GGCCCCCGTC TTTCTGGATG
CGTCATCGTC TGCTGATTAC GGTGTTAAGC GGGATGGCTG GTCTGCAGCT GCTGGCGGGC
TGGTTCCTGT GGCGATTGAG CGGTACCCGG CGTGGAACCC AGAAATATCT GCATGAGAAG
GAAGCTCAGT TCAAAACCGT GATCCGTGCC ACGCATGATG CCGTGGTCGT TATCAATGAG
CGCGGCCTTG TCACTCTTTT CAATCCTGCC GCGGAAGAAC TGTTCGGCTG GAGCAGCGCG
GAGATGCTTG GTTGCAATCT TGATATTCTT ATGCCGGAAG GGTATCGCGA TCAGCACCGA
CATGATGTTG CCAGCTTTTT CAGTACCGGC GAGCCTTCAG AGGCGGTGGG GCGGAGTCTC
GAGCTGTTGG CGGTGCATCG TTCCGGTAAG GAGTTTCCCA TTGAGTTGAG CCTGTCGGTT
GGGAAATATG GTCACGAGCG CTTCGTGTTG GCCATTTTGC GCGACATCTC CAGTCAACGC
CAGGTGGAAC GGGAAATCAA ACAGTTGGCC TATTATGACA GTTTGACAGG CCTGCCCAAC
AGGGCTCTGT TTGAGGATCG TTTCCGTCGT GTGCTGACCA CTGCAGACCG GGCGGGAAAA
ATGGCGGCAC TGCTGTTTAT CGGGGTCGAC AATCTCAATT CCATCAATGA TACCCACGGC
CACACCTATG GCGATAAATT GCTCAAAGTA ATCGGGCAGC GGCTGGTTGC TGTTGCTCAA
AATGGGGCCA CGGTGGTTCG CTGGGAGGGG GATAAATTTG TTGTCCTGCT GCCCGGCTTG
TCGGATGCGG AAACGGCTGA TACCGTAGCC AGGCAGATCC TCCAGTCAAT TGCCGAGCCG
TGTGAGGTCG ATGATCAGTC TTTTTTCGTG ACAGCCAGCA TCGGCGGCGC CGTCTATCCC
CAGCACGGGG CCGATGGCGA CAAGCTGCTA AAAAATGCGG ATATGGCCAT GTATGCGTCC
AAAGAGTTGG GGCGCAATAC CTATTGCACC TTTACCGAGG AGATGAATCG TCGGGTATTG
GAACGCAGCG GGCTTGAACA CAACTTGAGA CTAGCGCTTG CACGGGAAGA GTTTTTTCTC
GCTTATCAAC CGCAAGTCGA TCAGGCCACG GGAAAAGTTT TGGGTTCCGA GGCCTTGTTG
AGGTGGCGGC ATGCCGAAAA AGGTATGATC TCTCCGGGCC AGTTTATTCC TTTGGCCGAG
GAAAGCGGTC TGATCCTGCC TATCGGGCAT TGGGTGTTGC AGACCGCCTG TGCGCAGAAC
AAAGCATGGC AGCTTGCAGG TTATCCGCCC ATGCGTATTG CGGTTAATCT CTCGGCGCGT
CAATTTCAGC AGCCTGATTT TTTTGATCAG GTGGCCCAGG TTCTGAAAGA TACGGAACTG
GATCCTCGAT ATCTGGAGCT GGAGCTGACC GAAAGTTTGC TTATGGCGGA TGCGGATGTC
GCGGTCGAAA CGCTTCGCGC CTTACGAGAT CTCGGTGTGG GGATTGCCAT CGACGATTTC
GGTACCGGCT ATTCTTCCCT GAGTTATCTC AAGACTTTCC CCATCGACCG GATAAAAATC
GCGCAGGAAT TCGTGCTGGA CATCACTCGC GACCCTGGTG ATGCGGCCAT CGTCGAAACG
GTTATTGCCA TGGCCCATGG GCTTGGTCTG GATATCGTGG CGGAGGGTGT GGAAACCGAG
GCCCAGCTTG AATTTCTGCG TGCCCGCAGA TGCCAGGTTA TGCAGGGGTA TTATTTCGGT
CGGCCGATGC CGGCTGAAAA TTTCATTGAA TATCTGTCGG AGAACCTGGT GTCGGTTTTT
CCGGAAGTTG CTCGCGGCGC TTGA
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| Protein sequence | MNWRNALVVV FTICLLMPYA AWARDAKVLI LHSYHAGFAW TDDQQQGFLE ALKGSDVVGQ
VALRVEYLDA SPGGDQADLQ ESFYTYLKTK YTRFIPDLIY ATDDEAVAFL ERYRRRLFPS
TPVVYSGLDD LALDKRLDQQ AFQGVFELKD VAGSIALAMH LEPTLRTLFF IGDDSAAAQG
IKGRVEKEAA KVSPDIEVVF YNSASVEAIE AFLGNMQPKL LVVSSLEGVY DAQGNRVALH
DTLQRLNDVG RFKILAMKDI YLTSGALGGA VNRGREQGGQ AGYLAREQVF NETNADNESL
YEVVSTSYMF DYRQMQRFGL ASVDLPPGST IVGRPPSFWM RHRLLITVLS GMAGLQLLAG
WFLWRLSGTR RGTQKYLHEK EAQFKTVIRA THDAVVVINE RGLVTLFNPA AEELFGWSSA
EMLGCNLDIL MPEGYRDQHR HDVASFFSTG EPSEAVGRSL ELLAVHRSGK EFPIELSLSV
GKYGHERFVL AILRDISSQR QVEREIKQLA YYDSLTGLPN RALFEDRFRR VLTTADRAGK
MAALLFIGVD NLNSINDTHG HTYGDKLLKV IGQRLVAVAQ NGATVVRWEG DKFVVLLPGL
SDAETADTVA RQILQSIAEP CEVDDQSFFV TASIGGAVYP QHGADGDKLL KNADMAMYAS
KELGRNTYCT FTEEMNRRVL ERSGLEHNLR LALAREEFFL AYQPQVDQAT GKVLGSEALL
RWRHAEKGMI SPGQFIPLAE ESGLILPIGH WVLQTACAQN KAWQLAGYPP MRIAVNLSAR
QFQQPDFFDQ VAQVLKDTEL DPRYLELELT ESLLMADADV AVETLRALRD LGVGIAIDDF
GTGYSSLSYL KTFPIDRIKI AQEFVLDITR DPGDAAIVET VIAMAHGLGL DIVAEGVETE
AQLEFLRARR CQVMQGYYFG RPMPAENFIE YLSENLVSVF PEVARGA
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