| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0592 |
|---|
| Symbol | polA-1 |
|---|
| ID | 3724085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | + |
|---|
| Start bp | 717655 |
|---|
| End bp | 720330 |
|---|
| Gene Length | 2676 bp |
|---|
| Protein Length | 891 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637750177 |
|---|
| Product | DNA polymerase I |
|---|
| Protein accession | YP_356021 |
|---|
| Protein GI | 77918206 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | [TIGR00593] DNA polymerase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000000108203 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC AGGCCCAGCG CATTTATCTT ATCGATGGTT CTTCCTACAT CTATCGGGCA
TATTACGCCA TCCGCCAGCT GTCCAATTCC AAAGGGCTTG CGACCAATGC CGTGTACGGG
TTTACCAACA TGTTGCTCAA GGTGGTGCGC GACGAGCAGC CCGATCACCT GGCGGTGATT
TTCGATGCCA AGGGGCCGAC CTTTCGTAAG GAAATTTATC CCGAATACAA GGCCAACCGT
TCTGCCATGC CTGAAGATCT GCGCCCGCAG ATCCCGGTTA TCAAGGAACT GGTGAAGGCT
TTTAACATGC CGGCTCTGGA ACTTGAAGGT TACGAGGCGG ACGATATCAT CGCCACCCTG
GCACGGCGCT TCGCCGAGCG GGGCATGGCG GTTACCGTGG TAACCGGCGA CAAGGATTTG
ATGCAGGTTG TCAGCGAGCG GGTGCGGCTG CTCGATACCA TGAAAGATCA GGTCGTCGGT
CTGGCTGAAG TGGCCGAGCG TTTTGGCGGT ACTCCCGATA AGGTGGTGGA GGTGCAGGCC
CTGGCCGGCG ACAGTTCGGA CAATGTGCCG GGAGTGCCGG GAATCGGTGA AAAAACCGCG
CGTACCCTGA TCGCGCAATT CGGCACGCTG GAAAATCTGC TGGCCAATAT CGATCAGGTG
TCGGGTAAAA AGCGCCAGGA AAACCTGCGC CAGTTCGGTG AACAGGCCCG TTTGTCCAAA
AAGCTGGTTA GCCTGGTGGA CGATCTTTCG CTTGACGTCG ATTACGACAA CTTTGACCTT
AGCGAACCGA ACCACGAGGC TCTTACCCAT CTGTTCAAGG AACTGGAGTT TCACAAGTTG
CTGCAGGAAT TCTCCAGCGA CGAGAGGGCC AGCGGCGAGC ATTACCAGAC GGTGGTTACG
GAAGACCAGC TCGATGATCT GATTCATGCC TTGAAAAAGG CCGGCCGCTT CGCGTTCGAC
ACGGAGACCA CCAGTCTTGT CGCCACGCGT GCCGACCTGG TCGGGATATC CTTTGCGATC
AAGCCCGGTG AAGGCTGGTA TCTGCCGGTG GGGCACCGCT ATCTGGGGGT ACCGGAGCAA
CTGGATCGGG CGTTGGTGAT CGATAAATTG CGACCGCTGA TGGCGGATAC GCAGTTGGCC
AAAATCGCGC AGAACGCCAA GTACGACCTG CTGGTGTTGC GCCGTGCCGG GCTGGAAGTG
GCGGGGTTGA GCTGCGATAC CATGCTGGCT TCCTATCTGG CCAACCCGGC GGCCAAATCC
CACGGTCTCG ACACCCTGGC TTCGGAGCTG CTCGGCTATC GCACCATCGG TTACACCGAG
GTGACGGGCA AGGGCAAAAA ACAGATCGGC TTCGAAGAAG TCGAGATCGA AAAGGCCACG
GTTTATGCCA CCGAAGATGC CGACATCACC CTGCGGCTGG CCGATAAGCT GGAACCGCAG
CTGGCGGAAA CGGGTCAGGG CGAATTGTTT CGAACAGTGG AACTGCCGCT GGTGACGGTA
CTGAGCGATA TGGAGTGGCA AGGCGTGCGC ATCGATGCCG ACTTTCTCAA GGGATTGTCG
GCGGATATGA AGACGCGACT GGCGACGCTG GAGGGGGAAA TTCACGAACT TTCCGGTCGG
TCGTTCAACG TGGCGTCCCC CAAGCAGCTC GGCGAGGTGT TGTTCGAGCA CCTGAAGTTG
CCGCGCGGTA AAAAGACCAA GACCGGCTGG TCTACCGATG TCGAAGTCCT GACCAACCTT
GCTGAAGAAC ATCCGATCGC CGCCAGGGTG CTCGATTATC GCTCGGTGGC CAAGCTCAAA
AGCACTTATT GCGATGCGCT ACCCAAGCTG ATTCATCCCG ATACCGGGCG GATCCATACC
TCTTTCAATC AGGCGGTAAC GGCAACCGGA CGCCTTTCTT CGAGCGATCC GAATCTGCAG
AATATACCCA TCCGTACAGA GGAGGGGCGC CGTATTCGCG AAGCCTTTGT GCCGGCCGAG
GGAAATCTGC TGCTGGCGGC GGACTATTCC CAGGTGGAAT TACGGATTCT GGCACACATG
GCTGACGAGC CGGCTCTCAA GGAGAGTTTC GCGCATGGCG AAGACATTCA TGCGCGCACC
GCAAGCGAGA TCTTCGGTGT GTTTCTGGAG CTTGTCACGC CGGAAATGCG CCGCCAGGCC
AAAACCATCA ATTTCGGTGT GCTTTACGGC ATGAGCGCCT TCGGCCTGGC CAAATCCCTC
GGCATCGCGC GCAAGGAAGC CCAGACCTAT ATCGACAATT ATTTTGCCCG TTACCCCAAG
GTGCTGGAAT TCATGGAGGC CAAAAAGGCC GAAGCGCGGG AAAAGCAATA TGTCACGACC
CTTCTCGGAA GGCGTTGCGC CGTACCGGAG ATCGCCAGTA AAAACGGCGC GGTCCGCGGT
TATGCCGAAC GCAATGCCAT CAACTATCCG ATTCAGGGCT CGGCGGCCGA CATCATCAAG
GTGGCCATGC TGCGCATTCA CGAACGCCTG AAGGCCGAAA AACTGGAGAC CAAGATGGTG
CTTCAGGTGC ATGACGAACT GGTGTTCGAT ATGCCTGCCG CAGAACAGGC CGCCGTGGAA
AACCTGGTGC GGGAGCAGAT GGAACACGCC TTTGAGCTCG ATGTGCCGCT GTTGGTCGAT
ATGGGCGTCG GGCGTAACTG GCGCGAGGCG CACTGA
|
|---|
| Protein sequence | MTDQAQRIYL IDGSSYIYRA YYAIRQLSNS KGLATNAVYG FTNMLLKVVR DEQPDHLAVI
FDAKGPTFRK EIYPEYKANR SAMPEDLRPQ IPVIKELVKA FNMPALELEG YEADDIIATL
ARRFAERGMA VTVVTGDKDL MQVVSERVRL LDTMKDQVVG LAEVAERFGG TPDKVVEVQA
LAGDSSDNVP GVPGIGEKTA RTLIAQFGTL ENLLANIDQV SGKKRQENLR QFGEQARLSK
KLVSLVDDLS LDVDYDNFDL SEPNHEALTH LFKELEFHKL LQEFSSDERA SGEHYQTVVT
EDQLDDLIHA LKKAGRFAFD TETTSLVATR ADLVGISFAI KPGEGWYLPV GHRYLGVPEQ
LDRALVIDKL RPLMADTQLA KIAQNAKYDL LVLRRAGLEV AGLSCDTMLA SYLANPAAKS
HGLDTLASEL LGYRTIGYTE VTGKGKKQIG FEEVEIEKAT VYATEDADIT LRLADKLEPQ
LAETGQGELF RTVELPLVTV LSDMEWQGVR IDADFLKGLS ADMKTRLATL EGEIHELSGR
SFNVASPKQL GEVLFEHLKL PRGKKTKTGW STDVEVLTNL AEEHPIAARV LDYRSVAKLK
STYCDALPKL IHPDTGRIHT SFNQAVTATG RLSSSDPNLQ NIPIRTEEGR RIREAFVPAE
GNLLLAADYS QVELRILAHM ADEPALKESF AHGEDIHART ASEIFGVFLE LVTPEMRRQA
KTINFGVLYG MSAFGLAKSL GIARKEAQTY IDNYFARYPK VLEFMEAKKA EAREKQYVTT
LLGRRCAVPE IASKNGAVRG YAERNAINYP IQGSAADIIK VAMLRIHERL KAEKLETKMV
LQVHDELVFD MPAAEQAAVE NLVREQMEHA FELDVPLLVD MGVGRNWREA H
|
|---|
| |