| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0569 |
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| Symbol | |
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| ID | 3723224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 691833 |
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| End bp | 693869 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637750155 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_355999 |
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| Protein GI | 77918184 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00000000729555 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAAA GGAATGCCTT TTCCGTGCGT TGGTATCACA GTCTGCTGTT TCGAACGCCC
CTTCTGTTCC TTTTGCTCCT TGCGGTACTG GTGCTCAGCC TTACCATCAT CATGGACACC
GTTGGCCGCC CTCGCCTGGA AGAACAATCC TTTCGCATGG CGAACCAGGT GGGCAATACC
ATGGTGGCGC AACTGGGCGA GCGACTGGCC GTCGCCGAAA CCCTGGCCCG CGCGCTGGCA
ACCACCGGTG CAACCCTGCC CCTCAAAACG GAAGACCACC TGCAAATCAT CCCTCGCCTG
ATCGATGAAC TCGGACCGTC TTCCTACATT ATCGGCGGTG GGGTATGGTA CGACCCCTTT
GCTTTCGATC CCCATCGCGA GCGGGCCAGT TTTTTCTGGG GTCGCAATGC CTCGGGAGTT
CTCGAATTCG TAGCGGACTA CAACGATCCG AAAGGCCCCG GATACCACCA CGAGGAATGG
TATGTACCCG GACGTTTCTT GAAACCCGGA TCGATATTCT GGTCCAAGTC CTATGTGGAC
CCGCACACCT TCGTCCCCAT GGTTACCTGC ACCGCCCCCA TCTACAGGCA CGACCGGTTC
GTCGGCGTGG TCACCGTCGA CCTCAAACTC GCCGGTCTGG AAGCTTTTTT CGATGCTCAG
GCAAAAAAAA TGGGGGGATA CGCCTTTGCT GTGGACCGCA ACGGAAAATT TCTGTCGTTT
CCGGATGTCG CCCTCACCCG CATCAGCAAC CAGAACAGAT TCGGCCGCAA AGATATCGAG
TATATTCTGG CCCGCGACCT GGCCGACAAA CGGCCTCTCT TTGCGCCCCT GGCCGACGCC
CTGGACAGCA TCAGCAACGA TCTTCTGCAA AAAGCCAAAC AGTCCGCTCG CTATGACCGG
CAGGTCGCCG AAGTCATCGC CCGGGACACG TCCGAGATAT CTGCCGCGGA GGCGGACCTC
ATTGCGGCGG TACTGCAGAA CACAACCCTC CATAGCAACG AGGGGCAGAT ACTGCTCAAG
CATTTCACAA CGCCCGGGGA CCTGCTGCTC CAGGAACCCT GCAGCGTTGC CATTTTCCAT
GTCCCCAACA CCTACTGGAA CATCGTCACC GTGACACCGG TCAGCCATGC CATGTCCGCC
GCCACGGCTA TTTATCATGC CGTGCTGGCA GCCCTGATTG TCTGTGTCTC GGCAGCGGTT
ATCGGTGCTT TTCTGACACT GAACAACATG ATGATGCGCC CTTTGGCCCG CATCACCCAT
CAATTGAAAA ATGCCGTCGA TATCAATGCC GAGGAAATGC TCTGCCTGGA TGACAGCTTT
CGCAACGAAT TCGGCACCTT CGCTTACTGG TTCAATGTTC GAACCCGCAA ACTGGCCGAT
GCCCTGGAGC AGCTGCGCAT CATTCGTGGG GAATTGGAAC AACGGGTGGC TGAACGCACG
GAAACATTGG CGCACACCAA CACCAAGCTG GAACTGGAAG TACAGCAACG CCGACGGGCC
CAGCAATTCC TGCGAAGACT GGCCATGCTT GATCCCTTGA CCGACATGGC CAATCGCCGC
AGCTTCGATG CCTCGCTGCC GTCTTTCTGG CAGCGTGCCA AACAGAAAAA AAAGCCATTG
GCAATGCTCC TGGTCGACAT GGACAAGTTC AAACAGTTCA ACAACGCTTA CGGCTACCAG
GCCGGCGATC AGTGCCTCAA AAAAATCGCC AATACGATGG CGGAGTGTAC CCAGGGCGAC
GAGGTGCGTA TCGCCCGTTT CGGCGGCGAA CAGTTTGCCG TCATATTGCC CGACAGCGAC
GCCGAAGTGG CGCAGGCCGT TGCGGAAAAG ATCCGCAGGC AGGTCGAAGC GCTGCAGATC
CCTCACAGCG GCGAAGGTAT CAGCGGTGTC GTTACCGTCA GTGTCGGCGT AGCCAGCTTG
CTTCCCACCA AAGACACCCA CTACGAGCAC CTGATTGCCA AAACCAACCA GGCTCTGTAT
CAAGCCAAAA GCAATGGTCG CAACCAGGTA GCCGTCGACA GCCACATGCC CGGTTGA
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| Protein sequence | MNKRNAFSVR WYHSLLFRTP LLFLLLLAVL VLSLTIIMDT VGRPRLEEQS FRMANQVGNT
MVAQLGERLA VAETLARALA TTGATLPLKT EDHLQIIPRL IDELGPSSYI IGGGVWYDPF
AFDPHRERAS FFWGRNASGV LEFVADYNDP KGPGYHHEEW YVPGRFLKPG SIFWSKSYVD
PHTFVPMVTC TAPIYRHDRF VGVVTVDLKL AGLEAFFDAQ AKKMGGYAFA VDRNGKFLSF
PDVALTRISN QNRFGRKDIE YILARDLADK RPLFAPLADA LDSISNDLLQ KAKQSARYDR
QVAEVIARDT SEISAAEADL IAAVLQNTTL HSNEGQILLK HFTTPGDLLL QEPCSVAIFH
VPNTYWNIVT VTPVSHAMSA ATAIYHAVLA ALIVCVSAAV IGAFLTLNNM MMRPLARITH
QLKNAVDINA EEMLCLDDSF RNEFGTFAYW FNVRTRKLAD ALEQLRIIRG ELEQRVAERT
ETLAHTNTKL ELEVQQRRRA QQFLRRLAML DPLTDMANRR SFDASLPSFW QRAKQKKKPL
AMLLVDMDKF KQFNNAYGYQ AGDQCLKKIA NTMAECTQGD EVRIARFGGE QFAVILPDSD
AEVAQAVAEK IRRQVEALQI PHSGEGISGV VTVSVGVASL LPTKDTHYEH LIAKTNQALY
QAKSNGRNQV AVDSHMPG
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