| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0441 |
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| Symbol | shc |
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| ID | 3723154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 536276 |
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| End bp | 538489 |
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| Gene Length | 2214 bp |
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| Protein Length | 737 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637750027 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_355871 |
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| Protein GI | 77918056 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAAAA TCAAAATGAA AAACATAAAC CAGCCCAAAT TTAGAGTTTT TCGTGGTGGA
CAAAAAGCCG CTACGCCTTG TCCGGGGACG ACTAACGAGA GACGCGGTGC CCTGGATCGC
GGTCGTCTGT CGGCTTCCCT CAAGCATTCT CGCGAATGGC TGCTTTCGCT GCAGGCCGAC
GCCGGTAATT GGGTTTTTGC GTTGGAAGCG GATACCACCA TCGCTTCCGA ATATGTGATG
CTGCAACGTT TTCTCGGTCG CCCTCTTGCG CCTGAATTGC AACAACGTCT GGCCAATTAT
TTACTCAGTC GTCAATTGCC CGACGGTGGC TGGCCGTTAT ATGCGGAAGA CGGGTTTGCC
AATATCAGCA CCACCGTCAA GGCTTACCTG GCGCTTAAGC TGTTGGGTTA CCCGACCCAC
TGCGACCCCC TGGTGCGGGC GCGGCAAATC GTTTTGGCCC TCGGCGGTGC CGAAAAATGC
AATGTGTTCA CGCGCATCGC GCTGGCGCTG TTCGGGCAGA TTCCCTGGCG CACGACTCCG
GCCATGCCGG TTGAAATCAT GCTTTTGCCG CGCTGGTTCT ATTTTCATTT AAGTAAGATT
TCCTATTGGG CTCGTACCGT GGTGGTGCCG TTGCTGATTC TGTACGCCAA ACGCCCGGTC
TGCCGTCTGG AGCCCTGGGA AGGGATCCCT GAGCTGTTTG TCACGCCGCC GGATAAACTC
GGTTACCTCG ATGTCTGTAA ACCCGGTCAG TGGCGTAAAA ATGTCTTTAT CTGGGTGGAT
CGCCTGACCC GCAAAATGGT GCGCTGTGTC CCCCGGCGTC TGCACAACCT GGCGCTGAGG
GCTGCAGAGA CATGGACACG GGAGCATATG CAGGGCGCCG GAGGTATCGG GGCTATTTTC
CCGGCCATGG CCAATGCCGT CATGGCGCTG CGGACTCTGG GCTGCTCGCC GGATGATGCC
GATTATCAGC GCGGCCTCAA GGCTCTCGAC GATCTGCTGA TTGACCGTTG TGACGTTCCT
CCCCGGGAGG ATACGCCGGT TTCGCCGTGC TGGTGCACAG GCACCTCAGC CGCTCCGATG
CTCGATCCCA GCCCTGCCGG CAGCCATGCG CAGGGTGGCG ATCAGGGTAT CTGTCAACCT
TGTGCGTCGC CGATCTGGGA TACGGGACTT GCCCTTACGG CGCTGCTTGA AGGGGGGCTT
GATGCCAGGC ATCCGGCGGT CGATCGTGCG GTTCGCTGGC TGCTGGATCA GCAGGTCGAT
GTCAAGGGCG ACTGGGCGCA GCGGGTGCCG AACCTCGAAG CGGGCGGTTG GGCATTTCAG
TTCGAAAACG CTCTGTATCC CGATCTGGAC GATACCAGCA AGGTGCTGAT GTCCCTGATA
CGCGCCGGTG CGATGGATAA CCCGGGCTAT CGACAGGAGC TGTCGCGGGC TATCAATTGG
GTTATCGGCA TGCAGAACAG CGATGGAGGA TGGGGTGCCT TCGACGTTGA CAATAATTAC
CTTTATTTAA ATGATATCCC TTTCGCCGAT CATGGGGCGT TGCTCGATCC CAGTACTGCG
GATGTGACGG GGCGGTGCAT CGAAATGCTC GCTATGGCAG GTTTCGGCCG GGATTTTTTG
CCCATTGCCA GGGGGGTGGA TTTCCTGCGT CGTGAGCAGG AGGACTTCGG CGGTTGGTAT
GGTCGCTGGG GCGTGAACTA TATTTATGGG ACCTGGTCGG CCCTGTCCGG GTTGATCCAC
GCCGGCGAGG ATTTGCAGGC TCCTTATATC CGGCAGGCGG TGGGCTGGCT TGAATCGGTA
CAGAACCCGG ATGGTGGATG GGGCGAAACC TGTTATTCCT ATGACGATCC CGCCCTGGCC
GGACGTGGCG TCAGCACCGC CTCGCAGACA GCCTGGGCGC TCCTGGGGTT GATGGCCGCC
GGCGAGGTGG ACAACCTGGC AGTGCGGCGC GGGATTCAGT ATTTGGTGGA GGAACAAAAC
CGAGCCGGGG GCTGGGATGA ACGCCATTTC ACCGGAACCG GTTTCCCTCG GGTCTTTTAT
TTGCGTTACC ACGGGTACAG TCAGTACTTT CCCCTCTGGG CCCTCGGTCT GTACGAACGG
CTCAGCTCCG GGAACCCGAG CAGGCAGCAG ATGGTACGGC GGGCGGGGCC TGCCGGTTTG
CATCTGCCGG TTCTCGACCG GCGCAAAAAA CTACGTCGCA AGCGCAAAGC GTAA
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| Protein sequence | MDKIKMKNIN QPKFRVFRGG QKAATPCPGT TNERRGALDR GRLSASLKHS REWLLSLQAD
AGNWVFALEA DTTIASEYVM LQRFLGRPLA PELQQRLANY LLSRQLPDGG WPLYAEDGFA
NISTTVKAYL ALKLLGYPTH CDPLVRARQI VLALGGAEKC NVFTRIALAL FGQIPWRTTP
AMPVEIMLLP RWFYFHLSKI SYWARTVVVP LLILYAKRPV CRLEPWEGIP ELFVTPPDKL
GYLDVCKPGQ WRKNVFIWVD RLTRKMVRCV PRRLHNLALR AAETWTREHM QGAGGIGAIF
PAMANAVMAL RTLGCSPDDA DYQRGLKALD DLLIDRCDVP PREDTPVSPC WCTGTSAAPM
LDPSPAGSHA QGGDQGICQP CASPIWDTGL ALTALLEGGL DARHPAVDRA VRWLLDQQVD
VKGDWAQRVP NLEAGGWAFQ FENALYPDLD DTSKVLMSLI RAGAMDNPGY RQELSRAINW
VIGMQNSDGG WGAFDVDNNY LYLNDIPFAD HGALLDPSTA DVTGRCIEML AMAGFGRDFL
PIARGVDFLR REQEDFGGWY GRWGVNYIYG TWSALSGLIH AGEDLQAPYI RQAVGWLESV
QNPDGGWGET CYSYDDPALA GRGVSTASQT AWALLGLMAA GEVDNLAVRR GIQYLVEEQN
RAGGWDERHF TGTGFPRVFY LRYHGYSQYF PLWALGLYER LSSGNPSRQQ MVRRAGPAGL
HLPVLDRRKK LRRKRKA
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