| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0387 |
|---|
| Symbol | |
|---|
| ID | 3723331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | + |
|---|
| Start bp | 476392 |
|---|
| End bp | 477837 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637749972 |
|---|
| Product | putative MshA biogenesis protein, MshN-like |
|---|
| Protein accession | YP_355817 |
|---|
| Protein GI | 116878393 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.00107124 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGCCTTA TCAACCAAAT GCTCAAGGAT CTCGAGAAAC GCTCGACTCC GGACGCGTCA
TCCGGGCACG GCAGGGCTGC TTTTGCGCCT GCTGTCCGCG CAGATCGCCG TCGTAAGGTG
CTGTGGCTGG GGCTGCCGCT CTTGCTGCTG ATCCTCGGTG TCGGATTGTG GGCAGGTTTC
GGGCATGTTG GCGAGGCACC GCCGCCTTCC GACCTTGATC CGGTCGTAAC CGATGAAACG
CAAGACAATC TTCCTTCGGT TGCAACACAA CAATCCGTGC TGCCCGCAGC GCCCGAAGCC
GTGTCCCTTA AGACTTTGCG GCTTTTTCCG CACGACCATC GGCTGCAGGT TGAAGCGGTC
TTTTCGGAGG CACCGGCTTA TCGGCTTTTG CGCATCGACC ATGGTAGGCA GCTGGTCCTG
GAACTGCCGG AGGCGAGCCT GCCTGCCGCG CTGCCGCCTG CCGCCTCCTG GCCGTTGCTG
CGCAGTGTGG GGTACGAACG GGGCGAGCAT GGTCCCCGGC TGGTTTTCAC TTTCAAGGCG
GCTTGTCGAT ATGAGGAACT GGCGTTACTT GCGGCAGCTG ACGGCCAGGA TCAGATGCTG
CGTTTTACGG TACAGCCCGA GCCGAGTGCG GTAGCGGCGA CTGTTGCCAG GCCGGCGCCT
GTACTGCCTT CCGAGGATAA AGCTGCGTCC GAGCCGGTGC CGGCCGCGGT AGCGACTGTG
CAACCGGAAC AGCCAACCGC CCAACCGGAG CGGTCGACCG CAGAACCGAA GACTTTCGCT
GCTCAGCCAG GTATGACGCG ACAGACATTG CAGCTGACAC CCCATGAGCG TGCCTCCGAA
TTCAGCCGGG ATGCTCTTGC CGCTTTGCAG CAGGGAAAAG AGCGCGATGC GGAGGCCGCG
TTACGTTCAG CCCTGGCCAT TGAACCGGGC CATGAGCAGG CCTGCGATTT GTTGTTGCGG
CTGTTGAAAA AGCAAGGCCG TCGCGCCGAA ATCAGATTGT TGCTGGCTAC GGCGGTGCGG
GAACATCCGG CGCAGCTGTC GTATCGGGAA AATTATGCGC GCCTGTTGAT CGAGGAGGGC
GCATTAACCG AAGCCCGCGA ACAGTTGGCC CGCGAACCTC GACCGTCTGT GGCCGAGGCC
CTGGATTTGT ACGCCATGTT GGCCACGGTT TATCAGCGTC TGGCGCAATA CGAGGCCGCG
GCGCACATTT ATCGTCAAAT GCTGGAAGTT CAGCCGGAAA AGGCGATCTG GTGGATGGGG
CTTGGCATTG CTCTTGAAGG AAACCTGGAG GAGAATCAGG CGCGTCAAGC CTATGACCAG
GCCCTTGCCC GTGGCGGATT GTCCGCCGGG TTGCAGACCT ACATCCGACA GCGGCTGACG
GTATTGAAAA ATCGCCATGC TCAAAATCCC GCGACTGTTA CGGACGCAGG GAAGGAACCA
TCATGA
|
|---|
| Protein sequence | MSLINQMLKD LEKRSTPDAS SGHGRAAFAP AVRADRRRKV LWLGLPLLLL ILGVGLWAGF
GHVGEAPPPS DLDPVVTDET QDNLPSVATQ QSVLPAAPEA VSLKTLRLFP HDHRLQVEAV
FSEAPAYRLL RIDHGRQLVL ELPEASLPAA LPPAASWPLL RSVGYERGEH GPRLVFTFKA
ACRYEELALL AAADGQDQML RFTVQPEPSA VAATVARPAP VLPSEDKAAS EPVPAAVATV
QPEQPTAQPE RSTAEPKTFA AQPGMTRQTL QLTPHERASE FSRDALAALQ QGKERDAEAA
LRSALAIEPG HEQACDLLLR LLKKQGRRAE IRLLLATAVR EHPAQLSYRE NYARLLIEEG
ALTEAREQLA REPRPSVAEA LDLYAMLATV YQRLAQYEAA AHIYRQMLEV QPEKAIWWMG
LGIALEGNLE ENQARQAYDQ ALARGGLSAG LQTYIRQRLT VLKNRHAQNP ATVTDAGKEP
S
|
|---|
| |