Gene Pcar_0365 details

Gene Information

• Locus tag: Pcar_0365
• Symbol: hlyD
• ID: 3723287
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: +
• Start bp: 453726
• End bp: 454910
• Gene Length: 1185 bp
• Protein Length: 394 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637749949
• Product: membrane-fusion protein
• Protein accession: YP_355795
• Protein GI: 77917980
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0845] Membrane-fusion protein
• TIGRFAM ID: [TIGR01730] RND family efflux transporter, MFP subunit

Plasmid Coverage information

• Num covering plasmid clones: 74
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCGCT GGTTGCCAGA AAAACTAATG ACAACGGTGA AGGTTTTGTT GATTGTCTGC 
GGAGGATATT ATCTGCTGAT GCTTGGCTTC GGCTTCGCCG CACAACCGGA TGGCCCTCCT 
CCGGCGGCGC TACAGACCGG AAAGGTCTCG CGTGGCAGCA TGGAGGTTAC GGTGGCCTGT 
ACCGGCAGCT TGAAGGCGGT TGGTACGGTG GAGGTCGGCA CCGAGGTTTC CGGTACCATC 
GGCAAAGTGC TGGTCGACTA TAATGACCGG GTGCGTAAAG GACAGGTGCT GGCCGAACTC 
GATCTGGAAT TGTTCAAAAA CGCTGTGGAC GAGGCCGAAG CCAATCAGAT GGGTGCCGAA 
GCGCTGTATC GGCAGGCGCT CTCCGAATAT CGACGCAATC AGCCGCTGCA CCAGCAGGGC 
CATCTCTCCG ATCAGGAATT TCTTGAGTAC CGGACAGCGT TGGCCACCAC CGGCGCCGAT 
CTGCAATCCA GTAAAGCGAC CCTGGCCAAA GCGCGGACCA ATCTGCGCAA GGCGCGTATT 
CTGTCTCCCA TCGACGGCAC CGTGATCGAA AGGGAAATCG AGGTGGGCCA GACCGTGGCG 
GCCAGTTACA GTACTCCGAC CCTGTTTATT CTGGCCGAGG ATCTGGCCCG TATGGAAATC 
GAAGCCGATG TCGATGAAAG CGACATCGGG CTGATCCGCA AAGGACAAAA AGTCCGTTTT 
ACGGTACAGG CGTATCCTGA TCGTCAGTTT CACGGTGAGG TGACGCAGAT TCGCCTGAAC 
CCTACCGAGG AGTCGAACGT GGTGACCTAT ACCGTGGTGG TGGCCGCTCT TAATGATGGG 
GGGCTGCTGT TGCCGGGCAT GACCGCCACC GCCGATTTTA TCGTCGACGT GGAGGATGAC 
GCCCTGCTGG TTCCCAACGC GGCATTGCAG TTTGCCGCCC GTCGGCATCC CTCCGCGAAA 
GATGCAGCGG TGTTGGTGCT GGAAGATGGG GGGCGTTTGC GGCGTTTGGC CGTTGTAAGC 
GGTCTTTCCG ATGGCGTGCA GACGACGGTA TTGACTGAGG GCCTTACGGA GGGAATGGTG 
GTGGCGACTG GGGAGGCATC TTCGGAAGAG CGCTCGGGCG GCAGCCTTTT TTCCCGATTG 
ATGCCTCATC CGCGGCATGG ACCGAAGCCT GAGGGGAGAC CATGA 

 

Protein sequence

MKRWLPEKLM TTVKVLLIVC GGYYLLMLGF GFAAQPDGPP PAALQTGKVS RGSMEVTVAC 
TGSLKAVGTV EVGTEVSGTI GKVLVDYNDR VRKGQVLAEL DLELFKNAVD EAEANQMGAE 
ALYRQALSEY RRNQPLHQQG HLSDQEFLEY RTALATTGAD LQSSKATLAK ARTNLRKARI 
LSPIDGTVIE REIEVGQTVA ASYSTPTLFI LAEDLARMEI EADVDESDIG LIRKGQKVRF 
TVQAYPDRQF HGEVTQIRLN PTEESNVVTY TVVVAALNDG GLLLPGMTAT ADFIVDVEDD 
ALLVPNAALQ FAARRHPSAK DAAVLVLEDG GRLRRLAVVS GLSDGVQTTV LTEGLTEGMV 
VATGEASSEE RSGGSLFSRL MPHPRHGPKP EGRP