| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0355 |
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| Symbol | sqhC |
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| ID | 3723488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | + |
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| Start bp | 441124 |
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| End bp | 443211 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637749939 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_355785 |
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| Protein GI | 77917970 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 50 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAACGTCA TTCGGCAGCT GAACTCTGGG GTAAATGCGG CCAAAAGCCT GGATGATGGC
ATAGAGAGCG CCATCGAATG GCTGGCCGAG AACCAGGACA AAGAGGGGTT CTGGGTCGGC
ATGCTGGAAT CGAACTCGTG TATCGAGGCC GAGTGGATTC TGGCTATGCA TTTGCTTGGA
GTCAAAGACG ATCCCAAATA CGACAAGGTT GTGCAGGCCA TACTCAATGA GCAGCGTGAA
GACGGTTCCT GGGCAGTCTA TTACGATGCG CCGGCTGGCG ATATCAATGC AACGGTCGAA
GCCTATGCCG CTTTGCGCAC TGCTGGCTTC GGTGCCGGCG ACGAGCGGCT GATCAAGGCG
CGTAACTGGA TATTCTCCCA TGGCGGATTG AAAAACGTAC GTGTTTTTAC CCGCTACTGG
CTTGCCCTGA TCGGTGAATG GCCCTGGGAC GAAACGCCTG CCTTGGCCCC GGAAATCATA
TACTTGCCCG CCTGGTGCCC ACTCAATATT TACGATTTCG CCTGCTGGGC ACGTGCCACC
CTGGTACCGT TGAGCGTTCT TTCGGTTCGG CGTCCAGTGA AGCCCCTTCC CGCCGAAAGT
CGGCTGGACG AGTTGTTCCC CGAGGGGCGA GAAAACGCCG ACTACAGCTT GCCCGAGAGC
GAGAAGGGAC TGGCGGAACG TTTTTTTCTG GTGGTGGACT GGTTCCTGAA AAAATACAAC
CGGCTGCCCA TGCAGTTCGG CCGCGAAAAA GCTATCCGCC TGTGCCTGGA ATGGATCGTT
CGCCATCAGG ATTACGATGG CGGCTGGGGC GGTATTCAGC CGCCGTTGAT CTATTCCCTG
ATCGCCCTGA ATACGGAAGG CTACGGGATT AACCACCCGG TAATCAGCAA GGGGCTGGAT
GCTTTCAATC CCCCCTGGGC CTATGAGAAA AACGGCGGTG TTTACCTGCA GTGCAGTGAG
TCTCCGGTGT GGGACACTCT GTTTACCATG TTGGCCTTGT TTGAAAGCGG GTGCAGCTTC
GACGATACCC CCATGATGCG CCCGGCTCTT GACTGGATTC TCAGCAAACA GATTACCAGC
TGGGGTGATT GGCAGGTTAA AGTACGGGGG GTCCGCCCTG GTGGTTGGGC TTTCGAAAGG
GCCAATACGG CCTATCCCGA TGTCGACGAT ACGGCCTTGG CGCTGGTGGT GTTGGCTGAG
GCTCGACGCC ACGTGAAGGA TTCGGCAGCC GTCGATGCCG CCCTGGAGCG TGCCGAGGAG
TGGATTCTCG GTCTGCAATG CAGGAACGGC GGCTGGGCGG CTTTCGATCG CGACAATAAC
AGTGCCATCG TCACCAAAAT CCCTTTCTGC GATTTCGGTG AAGTGCTTGA TCCGCCCAGT
GTCGACGTTA CCGCCCATGT GGTTGAGGCG CTTGCCGCGC TCGGCCGGGA CCGGCACGAT
CCGGTTGTGG CGAGGGCTCT CAAGTATATC CGCAGTGAGC AGGAGCCCGG AGGTAGCTGG
TTCGGACGCT GGGGCGTCAA TCACATCTAT GGCACCTGTG CCGTGCTGCC TGCGCTGGCC
GCCATTGGCG AGGATATGAG GGCGCCTTAT GTGCTGCGTG CCGCGGATTG GCTGGTCCGG
CACCAGAATG ACGACGGTGG CTGGGGGGAA AGCTGCGCAT CCTACATGGA TGACAGTCAG
TGCGGACAAG GTTCCAGTAC CGCCTCTCAG ACCGGTTGGG CATTGATGGC GCTGGTGGCC
ATGAGTAGTC ATGATTACGA TGAGGCCATA CGCAGGGGGC TCGATTATCT GCTGTCCCAT
CAAAAATCCG GGACGTGGGA TGAGCCGCAG TATACCGGTA CCGGTTTTCC AGGCTATGGC
GTGGGCGAGC GTACCAACCT CAAGGAAGCC GGCGCCACGC TCGATCAGGG CTGTGAACTG
GCGCGCGGAT TCATGATCAA TTACAACATG TACCGGCATT ATTTCCCGCT CATAGCCATG
GCCCGCGCAC GCCGCCACCT GGGGCTGGCG GCCAATCCCC GGCACCAGGA TTCTCGCAGC
TCGGTAGAAG TCGCGCCTGA GGCGCTGCGT GGCAGAGCCT GCGGGTGA
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| Protein sequence | MNVIRQLNSG VNAAKSLDDG IESAIEWLAE NQDKEGFWVG MLESNSCIEA EWILAMHLLG
VKDDPKYDKV VQAILNEQRE DGSWAVYYDA PAGDINATVE AYAALRTAGF GAGDERLIKA
RNWIFSHGGL KNVRVFTRYW LALIGEWPWD ETPALAPEII YLPAWCPLNI YDFACWARAT
LVPLSVLSVR RPVKPLPAES RLDELFPEGR ENADYSLPES EKGLAERFFL VVDWFLKKYN
RLPMQFGREK AIRLCLEWIV RHQDYDGGWG GIQPPLIYSL IALNTEGYGI NHPVISKGLD
AFNPPWAYEK NGGVYLQCSE SPVWDTLFTM LALFESGCSF DDTPMMRPAL DWILSKQITS
WGDWQVKVRG VRPGGWAFER ANTAYPDVDD TALALVVLAE ARRHVKDSAA VDAALERAEE
WILGLQCRNG GWAAFDRDNN SAIVTKIPFC DFGEVLDPPS VDVTAHVVEA LAALGRDRHD
PVVARALKYI RSEQEPGGSW FGRWGVNHIY GTCAVLPALA AIGEDMRAPY VLRAADWLVR
HQNDDGGWGE SCASYMDDSQ CGQGSSTASQ TGWALMALVA MSSHDYDEAI RRGLDYLLSH
QKSGTWDEPQ YTGTGFPGYG VGERTNLKEA GATLDQGCEL ARGFMINYNM YRHYFPLIAM
ARARRHLGLA ANPRHQDSRS SVEVAPEALR GRACG
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