| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0276 |
|---|
| Symbol | |
|---|
| ID | 3723363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 344530 |
|---|
| End bp | 345525 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637749857 |
|---|
| Product | glucose-1-phosphate thymidylyltransferase |
|---|
| Protein accession | YP_355707 |
|---|
| Protein GI | 77917892 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
|---|
| TIGRFAM ID | [TIGR01208] glucose-1-phosphate thymidylylransferase, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.00854948 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA TTCTGCCGGT GGCGGGCAAA GGCACGCGAC TGCGCCCACA CACCCACACG
CGCGCCAAAT CCCTGGTGCA GGTGGCGGGT AAAACGGTTC TGGAACATAT CATCGAACGT
CTCAAGGTGC TGGCCGCCGA CGAGTTGATT TTTATCACCG ATGAAAATGG ACAGCAGATC
GAAGCGTTTA TGAAACGCGT CTTTCCCGAC CTGAACTGCA GCTACATCGT ACAGAAGGAT
CGTCTCGGAC CGGCCCACGC CGTAGCTCTG GCCGACCCCC GCATTGCCGA GGGCGACGAT
GTGCTGGTGG TCTTCAACGA CACCATCTTC GTCACCGATC TGACCCGCAT TCCGGAACTG
TGCGCGGAAG CCGACGGTTT GATCTATTCG AAGGAAGTCG AGGATTATCA GCGCTTCGGC
GTTAACGTGA TCCGCAACGG CATCATCGTC GACATGGTGG AAAAACCCGA CACGCCGGTC
TCGCGCCTGG CCCAGGTGGG GCTGTACTAC CTCAAGGATG CCAACCGTTT CATGCAGTAT
CTCGATCAGG CCATCCAGGC CGGCGACACG GTCAAAGGCG AATTTTACCT GCCGGCGGTG
TTTATGCGCA TGGTCAACGA CGGCCTGCGC TTCCGCGCGC CGGAAATCGA TGCCTGGCTC
GACTGCGGCA AACCCGAGAC CCTGCTCGAA ACCAACCGTT ACCTGCTGGA AGAACGCCAC
AGCTGCCAGG GCGACCTCAT CGACACCGTG GTCATCCCGC CGGTCTTTAT CGCCGACGGC
GTGACGGTAC GCGGCAGCAT TATCGGCCCC TATGTCTCCC TGGCCACCGG CACGACCGTC
GAGGCCAGCA TCGTCCGCGA CTCCATCGTC AATGCCGACT GCCAGGTCAA AGACGCCAAT
CTGCGTTTCA GCATTCTCGG CAACGGCGTG CGTCTGGCCG GTTCGCCGCG GCGCATGAAT
ATCGGCGACG ACTCGCTGAT CGAAATGGAC AGCTGA
|
|---|
| Protein sequence | MKIILPVAGK GTRLRPHTHT RAKSLVQVAG KTVLEHIIER LKVLAADELI FITDENGQQI
EAFMKRVFPD LNCSYIVQKD RLGPAHAVAL ADPRIAEGDD VLVVFNDTIF VTDLTRIPEL
CAEADGLIYS KEVEDYQRFG VNVIRNGIIV DMVEKPDTPV SRLAQVGLYY LKDANRFMQY
LDQAIQAGDT VKGEFYLPAV FMRMVNDGLR FRAPEIDAWL DCGKPETLLE TNRYLLEERH
SCQGDLIDTV VIPPVFIADG VTVRGSIIGP YVSLATGTTV EASIVRDSIV NADCQVKDAN
LRFSILGNGV RLAGSPRRMN IGDDSLIEMD S
|
|---|
| |