Gene Pcar_0138 details

Gene Information

• Locus tag: Pcar_0138
• ID: 3722933
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: +
• Start bp: 171496
• End bp: 171945
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637749716
• Product: putative pilus assembly protein
• Protein accession: YP_355570
• Protein GI: 77917755
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4968] Tfp pilus assembly protein PilE
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 80
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCTTTA TTCACAGAGC ATTAAAACGG CCTTGGACGG AACTCTTTAC AAAGATTGGT 
AGACCCAAGA CGGCTGGTTT TTCGCTGATC GAACTCATGA TCGTAATGAG CATTATGGCC 
ATTCTGGCCG CAATCGCCAA TCCTGTCTAT CAAAGACACC TTATCAAGGC CCGCGAGGCG 
GTTCTGGCGG AAGATCTGTA CCAGATGCGG CAGGCCATCG ACAAGTTTTT TGCAGACAAA 
CTGCGTTATC CGGACAATCT GCGTGAACTG GTCACGGCCA AGTACCTGCG CAGCGTGCCC 
AAGGATCCCT TCACCAAATC CGCCGAAAGC TGGAAGCTTA GTGCCCCGGA ACCTGACCAA 
GGGGAGGCGC CTCCGCGCGG CAGCGTTTTC GACGTGACCA GCGGCAGCGA TCTGATCGGT 
TTGAACGGAG TGCCCTATCG GGATTGGTGA 

 

Protein sequence

MTFIHRALKR PWTELFTKIG RPKTAGFSLI ELMIVMSIMA ILAAIANPVY QRHLIKAREA 
VLAEDLYQMR QAIDKFFADK LRYPDNLREL VTAKYLRSVP KDPFTKSAES WKLSAPEPDQ 
GEAPPRGSVF DVTSGSDLIG LNGVPYRDW