Gene Pcar_0105 details

Gene Information

• Locus tag: Pcar_0105
• ID: 3722900
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 126293
• End bp: 128176
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637749684
• Product: ABC-type transport systems, periplasmic component
• Protein accession: YP_355538
• Protein GI: 77917723
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 50
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTGACC ACCGCCTAAG GAGTATCATT GTGCTGAAAC GCACCAACCT CGCAGCTTTA 
CTGCTTGTGT TTCTCGCCGT GCTGCCGGGG CTTCGCGTCT GTGCCGCGAC GACGGATTCG 
CCCCTGAAGC AGGCCCTGGA ACTGTACCGG TCCGGTGCGC CCGATCGTGC CGTACCCCTG 
TTCAAGGCCG CTATTGCACA GGATCCGGAG GCCCCGGAAA CCTGGCGGGC GCATCTGGCA 
CTGGCGCGCA TTTATCACCA AAAGGGCCGC CTGGCGGATA TGCTCGCTGA GCTTGGCGCT 
ATTCCGGCCG ACCGTCGCAC CCCGGAAACC CGTCTTCTCG AGGGCTTCGG CCTGATCGGT 
ACAGGCCAGC ACGCCTCCGG CGTGGAACTG CTGCGGAACC TCACGGAAAA CGACCTTAAC 
GGCAGCCAGC AGCAACAACG CCTCACGGCC CTTACCGAGG GCCTGGTGCA TCTTGAGCGC 
CCCATGGAAG CGCTCTTCTT CATACAACAG CTGCTGCAGC AAACCATCGA TCCTCCACAG 
GTATCGTCCC TTCTGCAAAA GGCTCACGAA CTGTTGAAAG ATCGCTGCAG CGATGCGCAA 
CTGGCCGAAG CGGCCTTTTT GTATCAGGGT ACGGCCCTCG GGCAGGATGC CCTGCTGCTG 
CAGGCATGGC GCCACAAACA GGCGGGCCGG ACCGACCAGG CGTTACTGCT TGTCAACAGC 
GTATTGAACA CACCCATCGA CTTCCCCTTC CGCAACGATG CCGATTTGCT GCTGCAACAG 
TTGTCCCACG GCGGAGAAAC GCCGGCACTG GGTGTCATAC TGCCTCTTTC CGGACGCTTC 
GGGCACTACG GAAAGATGGT TCTTCAGGGC ATGCAACTGG CGCTGGAACA ACATAACCTG 
CAACACGCAC CGGTACACTT TCTGGTAAGG GACAGTGCCG GCGATCCGGA TCTTACGGCG 
CAGCTGGTGA CCGAACTGGC CGCGTCGCCT CAAATACTCG GCATACTCGG CCCCCTGACG 
GGCAGCGCTG CCAAACGGGC GGCTCACACA GCCGAACGAC TGCAGCTGCC GCTGCTCACC 
CTGTCGCAAC AGACGGGGCT TCCGCAGATC GGTTCCTGGA TATTTCGCAA CTCCCTGACC 
AGCGAACTGC AAGTCCGGAC ACTGGTCAAT TACGCCATGT ACCAGCAGAA CATGACGTCT 
TTTGGCATCC TGGCCCCCGA AACCCGTCTC GGGCAGGATC TCTCCACCGC CTTTGCCGAT 
GAAGTACGCG CCCGGGGCGG ACAGATTGTT GCTGTGCAGT CCTACCAGCC GCAAGCCACC 
GACTTCCGCG AACAGATCAA ACGGTTGCAG GGCAAACAGC CCAACGAGCC TGAAACCACC 
CCGGAGGATG CCGAAGCCCA GGCCGCCGAG CCTCCTCCCT TTGACGCCCT GTTTATTCCC 
GACACCCCGA ACAGGTTGGC CTTGATCGCA CCGCAGCTGC CGTTTTACGG GCTGGACGAT 
ATCTCTCTTC TGGGAAGCGC CAACTGGGAT GCCCCGAACC TGCTGCCGCA GGCAGGGCCA 
TATATAGAAA ATGCCGTGTT CGTCAGCGGC TTCCATCGCT ATAGCGCCTA TCCGTTTGTA 
AAGGATTTTG TCGACCGTTA TTTCGAACGA TACGGCGCAG AACCGTCCCT GCTCGAAGCC 
CAGGGATACG ATGTGGCAGG GATCGCTCTT TCCCTGCTGG CAAACCCTAC TGCCCACAGT 
CGGGCAAACC TTCGCCGCGA CCTGACACAA ATGCGGCACT ACCCCGGAGT CACCGGGGCC 
AGCAGCTTCA CGACCACCGG CGATGCCGAC AAGGTACTGT ATCTGCTGCA GATTCGCCAA 
GGGGCCCTGG TTGAACTGAA CTGA 

 

Protein sequence

MPDHRLRSII VLKRTNLAAL LLVFLAVLPG LRVCAATTDS PLKQALELYR SGAPDRAVPL 
FKAAIAQDPE APETWRAHLA LARIYHQKGR LADMLAELGA IPADRRTPET RLLEGFGLIG 
TGQHASGVEL LRNLTENDLN GSQQQQRLTA LTEGLVHLER PMEALFFIQQ LLQQTIDPPQ 
VSSLLQKAHE LLKDRCSDAQ LAEAAFLYQG TALGQDALLL QAWRHKQAGR TDQALLLVNS 
VLNTPIDFPF RNDADLLLQQ LSHGGETPAL GVILPLSGRF GHYGKMVLQG MQLALEQHNL 
QHAPVHFLVR DSAGDPDLTA QLVTELAASP QILGILGPLT GSAAKRAAHT AERLQLPLLT 
LSQQTGLPQI GSWIFRNSLT SELQVRTLVN YAMYQQNMTS FGILAPETRL GQDLSTAFAD 
EVRARGGQIV AVQSYQPQAT DFREQIKRLQ GKQPNEPETT PEDAEAQAAE PPPFDALFIP 
DTPNRLALIA PQLPFYGLDD ISLLGSANWD APNLLPQAGP YIENAVFVSG FHRYSAYPFV 
KDFVDRYFER YGAEPSLLEA QGYDVAGIAL SLLANPTAHS RANLRRDLTQ MRHYPGVTGA 
SSFTTTGDAD KVLYLLQIRQ GALVELN