| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_0040 |
|---|
| Symbol | |
|---|
| ID | 3723139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 44973 |
|---|
| End bp | 45692 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637749619 |
|---|
| Product | response regulator |
|---|
| Protein accession | YP_355473 |
|---|
| Protein GI | 77917658 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
|---|
| TIGRFAM ID | [TIGR02266] Myxococcus xanthus paralogous domain TIGR02266 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.0000155004 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGATA TCCTCAAAGT ACTGATCACC CGCGATTTGT TGCCATATTT CGAATCGGAC
AGGGATTTTG CCCGACAGGA AGGATTTTCC CTGCAGGTGG TCGAAGATGG CGCCGCGGCA
TGGAAGGAAC TGGATCAGGC CTGGCCTAAC CTGGTGATGA TGGATCTTAA CGCCGCAGGC
ATGCCGGGAG ACGAATTCTG CCGCCGCCTT AACAAGGAAC GGCAATTGCG GCATATTCCG
GTGGTGCTGA TGGTGGAAAG CCAGGAACCC AAGGAGCTCA ACCGGTGTCT CAAGGCGCGC
TGCGCGGATA TTCTGTTCAA ACCGTTGAGC AAACATCTGC TGATGGCTGC GGCACGCCGC
ATCCTGGGGT TGACCTACCG TACCTTTCCG CGCATTCCCA TGTGCCTGGA AGTATCCTAT
GGCGATGCGC CCGGCGAAAG GCAGACCGGC GCGTGCGTCA ACCTGTGTAG CGGGGGTATG
TTTATCGAAA CCGTACGGCC GTTGCCCGTC GAGCAACGAT TGCACCTCGA ATTCGTTCTG
CCCGGCACCA CCAGGCATAT CGCCTGCCAG GCCAGCGTAG CCTGGGTAAA CGACGCCCAG
AACCCCGTCA ACAAAAACCT GCCGGCCGGC ATGGGTCTGC AGTTTCTCTC CCTCAACCTG
ACGGAGCTAC TCGCCATCTG CCGTTATATC CGCCGGCGCA GCATTGCGCC CGAGGGCTGA
|
|---|
| Protein sequence | MPDILKVLIT RDLLPYFESD RDFARQEGFS LQVVEDGAAA WKELDQAWPN LVMMDLNAAG
MPGDEFCRRL NKERQLRHIP VVLMVESQEP KELNRCLKAR CADILFKPLS KHLLMAAARR
ILGLTYRTFP RIPMCLEVSY GDAPGERQTG ACVNLCSGGM FIETVRPLPV EQRLHLEFVL
PGTTRHIACQ ASVAWVNDAQ NPVNKNLPAG MGLQFLSLNL TELLAICRYI RRRSIAPEG
|
|---|
| |