| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_3540 |
|---|
| Symbol | |
|---|
| ID | 3721954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007494 |
|---|
| Strand | - |
|---|
| Start bp | 624206 |
|---|
| End bp | 630388 |
|---|
| Gene Length | 6183 bp |
|---|
| Protein Length | 2060 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640073204 |
|---|
| Product | putative adhesin or RTX toxin |
|---|
| Protein accession | YP_355042 |
|---|
| Protein GI | 77465539 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01965] VCBS repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACAG TGAACCTGAC CTCTGCCCTG ACCTTCTCCG AGGGCGGCGT GCCGCAGCTC
GTCGACCCGA ACATCACGAT CACGGGCGGC GGAGCCTTTA CCGAAGGCTA CATCGAATTC
TCGGTCAGTT CGCCCACGGC CGGCGACAAC TTCAGCCTGA CCAGCGCCGC CAATCCGCTG
GCCAACGGCG CGATCTCGTT CGAGAACGGC GACGTCTATC TCGGGACCGG CTCGGCCCGC
GAGCGGATCG GCTCGGTCGA TGCGACCTTC GACGGCCAGG ACGGCCAGCC GCTGCGCATC
CTGTTCTCGA GCCCGCTGCC GAACGCCGGC TTCGAGGAAG GCGAGGCGAA CTGGACCATC
CGCGACGAGC AATATGGCGA CAACGGCAGC GAGCTGAACC TCGACGGCCT GCAGATCACG
CTGGCCAATG ACTCGGCCTA CAGCGGCGGC ACCGGCACGA CCAACGTCCA GGCCTCCGCC
GGCATGACCT GGGACGGGTC GGTGCAGGAT GGTGCGGGCG TTGACGGATC GCGCGCCCTC
TATCTCGGCA GCGGCGGAAA CATCGTTGCG GGCGATCAGA ACCCGGCCGG CGGCTATCAG
GTCAACGGCT ACGGCTCGAT CCACGGCCCC TATGCCACCA GCTCGGTGAT CACCGTCGCG
CAGGGTGACT CGATCTCGCT CGACTTTCAG GCCGTGGGCA CGAGCGACGA CTACGAGGTG
TTCGGCTTCC TGCGTCGCGT CGACGCCAAC GGCAACTTCC TGAGCAACAG CGTCAGCAGC
CCCGACAACA TCCTGCTCTT CGCCCAGCGG GGCGATGACA CCAGCGGGTG GACGACCATC
AGCAAGGACG GCCTGCCCGC AGGCAGCTAC CGGTTCGAGT TCGTCGGCGG CACCTATGAT
GGCACGGGCG GCCTCGCGGT GGGCTCGAAC CTCTTTGTCG ACAACATCCG CCTGATCTCG
GCCACCTCGG TGAACGACAG CATCGCCCAG GCCATCGCCC GGCAGGTCGC CTACCAGAAC
GACGCCAATG ATGCGCCGGT CACCCGCCAG ATCACGGTCA CGGCCGTGGA CGGCAACGGC
ATCAGCGGCT CCTCCTCGAA CGGCCTGACC TTCGAAGGCG AGAACGACGC GCCGAGCCTT
GCCAACACCA CGCTCACCTC GATCGCCGAG GACAGCAGCC CCGCCGGCCA GACCATCGCC
GCAGCCTTCG GCGGCTCCTT CTCGGATCCC GACAACGCCT ATTCCCCCAC CGACTCGATG
GCGGGCGTCG TCATCACCGG CAATGCGGCG ACCGGCGCCC AAGGCGACTG GCAGTATTCG
ACCGACGGCG GCACCACCTG GATCTCGGTC GGCAGCGTGA CCTCGCAGAG CGGGCTCGTG
CTTTCCTCGG CCACGCTGAT CCGCTTCGAA CCCGCGCTGA ACTGGAACGG CACGCCCGGC
GCGCTGACGC TCCATGCGCT GGACAGCACC TATGGCGGCA GCTTCACCAG CGGCACGACG
GCGGTGAACC TCGACACGAC CGGCGCCACC GGCACCGGCG CGCTCAGCCA GAACAGCGCC
ACCGGCTCGA TCACCGTCAC CCCGGTCAAC GACGCCCCCG TCTTCACCGC GGCCCCGGTC
GCGCTGACGG TTGCCGACAC CGAGGCCGTG GACACGCCGG CCGCGCTCAC CGGCTCGATC
TCGGCCTCCG ACCTGCATGG CGGTGCGCCG GGCGAAGGCG GCACGCTCAG CTACGGCGTT
CAGGGCGGCG TGTCGGCCAA CGGCTTCTCG GTTCTGACGC TGCCCTACGG CACGCTGTCG
GTGAACCAGT CGACCGGAGC CTACAGCTTC CTGCCGAACC CCACGGCGCT GAACAGCCTC
GCCGAGGGTG CAGAGGCGAA CTTCTCCTTC ACGCTCACCG TCTCGGACGG GCAGGGCGGC
ACGCAGACCG CGCCGCTCGA CATCACCTTC ACCGGCGCCA ACGACGTGCC GGTCGTCAGC
GCCCAGACCG GCACGGCGGT CGAGGCCTCG GGTCTCAACA ACAACGTCGC CGGCAGCGCG
GCCACGGGCT CGCTGCTGAC CGGTCCGAAT GCGGCGACCG ATATCGACGG CGACGAGATC
TCGGTGGTGG GTGTGCGCAC CGGCGGCCAG TCCGAGACCG GCACCGAAGG CGTCTGGACC
GACGGCACGA TCACGCTTCA GGGCACCTAC GGCACGCTGA CGCTGAACGA GGACGGCAGC
TGGTCCTACG CGGCCGACGA TGACAACCCG ACCGTCGACG GCCTGACCGG GCCGACCGAC
ACGCTGGAGG AGACCTTCAC CTACACCGTG ACGGACGCGA ACGGCGCCAC CGCGTCGCAG
GAGCTGACCG TCACCATCTC GGGCCGCAAC GACGCGCTGA ACGTGTCGAG CAGCATCGGC
ACCGATATCT CGACGGGCGA GGATGCCGAC ACGCAGATCG ACCTTACCGG CCTCGTGTTC
GAAGACCCCG ATCTGGGCTC GGAAATCTAC GAATTCGCCG TGGATGCGGG CCAGGGCACG
CTCTGGACCG AAGGTGTGGA CGGGCTGACC GTCACCGGCA ACGGAACGGG CCAGCTGGTG
CTGACCGGCT CGGCCACCGC GATTTCCGAA TGGATCGCGG CCAACGACCT GACCTACCGC
TCGCCCGTGG AAGGCAGCGG CGCCGACACG ATCAGCCTCT CCTACAGCGA GGCGGGCGCC
GAGGTCCGCA CGGCGCTCGA GTCCATCGAC GTCGCGGTGG ACATGATCAA CGACCCGGCC
GTGGTCGATG TGAACGGCTC GGTCACGACC CAGGGCAGCG CCGGCGTGGC CGAAGTGGCT
CAGGTCACCT TCCTGTCGAC CGGCACCGCT CAGGTGCTGA ATTTCGACGG GGTGCAGATG
CAGATCGCGG CCGGCAGCAC TGCCGCCGAG ATTGCCGAAG CCTTCGCGGC GCAGGAGTTC
CCGAACTGGA CCGTCAGCCT TGACGGCGAG GGCCGGGTGA CGCTGACCGC GACCGCCACC
GGCGCGCGGC CGGACCTGAC GGCGGCCGAC TTCACCAACG GCTCGGGCGC CTTCTCGCCG
CTGGTCGAGA CCACCGGCGG CACCGACGGC AGCATCAATT TCACCGCGCG CGGACCGGCC
ATCGCCATCC TGCCGACGCT GGAACTGAGC GACGTCGACA GCGCGATGAT GTCGGGCGCC
AAGGTCAGCA TGACCGAAGG CCTGTTCGAC AACGGGTTCG GCACGATCTA CGAACGGCTC
TCGCTGTCGG CGGAGGCGCG GGAATTCGCG CAGCAGAACG GCGTGGGCAT CAGCATCGTG
ACGACGGCCG CTGCCGGCTC GGTCATCACC TTCACCGGCA TGGCCTCGGC GGAGGTCTAC
GAGACCATCC TGCGCGGCGT GATCTACAGC AACACCAACC CGAATGCGGT GGCGGGCACC
CGCCCCGTGA AGATCGAAGT GACCGACTCT GACGGGCTCG CCTCGAGCCT CTCCAGCGTC
AACCTGACAG AGGGCAACAC CGACATCGCC GTCGGCCAGC GCATCTTCAT CAACGGCGTG
GACAGCGGCC AGGTCGTCTC GATGGTGCGC GACGCCACCA GCTTCGTGGC CAGCGGCCCG
CTGGCCGATC TGGAGCCGGG TGCGGTGCTG AGCTTCCATG ACGGCAGCGG TCAGCAGACC
ACGGCGGTTT CGGCGGGCGA CGGCACGGCC ACGATGGACG TGAACGTGAT CTGGGCTCCC
GTGATCGACA TGAACGGCGC CGGCGCGGGC GATATCCACC GGACGACCTA CATCGAGCAG
CATGCCCCGA TCGCCATCGC GACCGCCGAT GCCCGCATCG TCGATCAGGA AGGTCTGATC
CGCTCGCTCG ACGTCGTGCT GACCAACCCG CTCGACAATG TCGAAGGTTC GGCTCCGGTC
GAATATCTCG GCATCTCGAA GGCGGTGCTG GACGTGCTGG CGGCCCGCGG CATCACCATC
GGTGCCCATG ACGGCCAGTT CGACGCCAAC GGCAACCTGA CCGGCGCCAC CTCGATCACC
TTCGCGGCGG CCAACGGCGC CAGCGCCACC AGCTTCCAGA TTGCGCTGCG GGGCGTGACC
TATGCCAACA TGGACGATGC CCCGGACACC GGGACGCGGA TCGTGACGGC GCAGGGCACC
GACATGGACG GCAACGAGGG CCTGATCTCG CACACCGAGA TCAACCCGAT CGCGGTGGGC
GACGCGCCGG TGGCGATCGA CAGCGGCGTG ACCGGCTCCG AAGATGCGGG CCATGTCTTT
GCCGCCGGAG ACTTCGGCTT TGCCGATCCG CTGGATGGCG GCGCGAACCA GCTCGCCTCG
ATCACCATCA ACAGCCTGCC CGCCACGGGC ACGCTGCTCC TGGGCGGGGT CGCGGTCGCC
GTGGGCACCG TGGTCACCCT CGCGCAGCTT CAGGCCGGCG CGCTGACCTA TCAGCCGGTG
GCCAACGTGA ACGGTGAAGG GGTCGCCTCG TTCGACTTCC TCGTGACCGA CAACGGCAGC
CTCGCCAACG GCGGCCAGAC CACCTCGACC GCTCCGGCAA CCATGGTGAT CGACCTGACG
CCGGTGAACG ATGCTCCGGT CCTGCCGGAA GGCACCTCCG TCACCGGCAC CACGATCACC
GAAGACCAGC AGCTGAATGC CGGTGAACTG GTGGCCGATC TGGTCGGCGC CATGACGGAT
GTCGATACGG GCGTGCACAG CGCCACGAAC GGCACCCAGC AGGGCATCGC GGTTTATGGC
GCGGGCTCCG AAGGGTTCGG CGGCGGCACC TGGCAGTATC GTCTCGCCGG CGGCACCGAC
TGGATCGACG TCACCCTCGA TCCGGGCGAG GTCCTGCTGC TCGGTGCGGA CGACCGCATC
CGCTTCTCGC CGGATGGCGA GAACGCGACC GAGGCGCAGC TGTCCTACTA CGCCTGGGAC
GGGGCGACCG GCACCGCGGG CAACGTGGTC GCAGGCATCG CGGGGCCGGG CAATGCCTCG
AACCGTGGCG GCACCTCGGC CTTCTCCAGC AACGGCGCCT CTGCCACGGT CGAGGTGACA
GCTGTCAACG ACGCGCCGTC GATCAGCATG GGCGAGGGCA ATACCTTCTA TGCTCGCGGC
GAGGCGGTGG CGCTGTTCTC GGACGAGACG CTGCAACTGA CCGACCCGGA CGAGGGCGCG
GCGGTAAGCC AGATTGTCAT CACGCTCGAT GGCGAGACCA CGGTCGACAA CGCCTTCGGC
ACCACCTACG AGACGATCTT CTCGGCCAGC GGCTCGACCT TCGTGGCCCA GTCGGGCACC
GAACTGACCA TCTCGGGCAC CGGTGTGGCG GGCGATCCGC TCACCATCTC GGGGGCCGGG
TCGATGGAGG ACTACCGTGA GGCGCTCCTC AGCCTGCGCT ACGAGAACAC CAACCCGAAC
GCCTTCGCGG GCGACCGGGC GATCTCGGTC ACGGTGACGG ATGAGACGGG GGCGGGCTCC
GCGCCGACGG ACTTCATCCT GCCGGTGGAA TGGGCAACGG TGGCCGATCT CAACGGTCCG
TCGGGCGAAG GCCGCGACCA CTCGATCACC TATCTCGAGG GCAGCGGCAG CCAGGCCATC
GCTACGGCCG ATGCCGAGAT GATCGACCAG GACGGCAACA CCGTCGAGGT CGTCATCACG
CTCGAGGATG CGGTGAACGG CTCGGCCGAG ATGCTGTTCG TCGATCCGGC GGTCCTGCCG
GCTCTGGCGG CGCTGAACAT CGTGGTCACC GGCAACGGCA CCCACGAGAT CCGGCTGACG
AGCGAGGAGG GCGTGGATCC CACGAACTTC CAGCTGGCGC TGCGGGCCGT GCGTTACGTC
AACAGCTCGA CCGCACCCAC CGCGGCGGAG CGCCATGTCA CGGTCTCCTC GACCGATGCC
GACGGCAACC CGGGCGTTCC GGCCACCACG GTGATCGGGA TGGAGCTGGG TGAACGACGC
ACCGGTTGCG GATCTCTCGA TCTCCTACGA GGCGTCCGAG ACCCGCAACC CGCTGTCGGG
CGATCAGCTG CTGCTCGACG GCACGCTGGA CGATGCCGAC GGGCTCGGGC CGAACCCGCC
GGTCATCGAA TGGCTGCGGG ACGGTGTGGT GATCGCTTCG GGCAACGGCA TGCCGGTCTA
CACGCTGAAA CCGGCGGATG CAGGCCATGT CATCAGCGCC CGCATCACCT ACACCGACGG
TGA
|
|---|
| Protein sequence | MPTVNLTSAL TFSEGGVPQL VDPNITITGG GAFTEGYIEF SVSSPTAGDN FSLTSAANPL
ANGAISFENG DVYLGTGSAR ERIGSVDATF DGQDGQPLRI LFSSPLPNAG FEEGEANWTI
RDEQYGDNGS ELNLDGLQIT LANDSAYSGG TGTTNVQASA GMTWDGSVQD GAGVDGSRAL
YLGSGGNIVA GDQNPAGGYQ VNGYGSIHGP YATSSVITVA QGDSISLDFQ AVGTSDDYEV
FGFLRRVDAN GNFLSNSVSS PDNILLFAQR GDDTSGWTTI SKDGLPAGSY RFEFVGGTYD
GTGGLAVGSN LFVDNIRLIS ATSVNDSIAQ AIARQVAYQN DANDAPVTRQ ITVTAVDGNG
ISGSSSNGLT FEGENDAPSL ANTTLTSIAE DSSPAGQTIA AAFGGSFSDP DNAYSPTDSM
AGVVITGNAA TGAQGDWQYS TDGGTTWISV GSVTSQSGLV LSSATLIRFE PALNWNGTPG
ALTLHALDST YGGSFTSGTT AVNLDTTGAT GTGALSQNSA TGSITVTPVN DAPVFTAAPV
ALTVADTEAV DTPAALTGSI SASDLHGGAP GEGGTLSYGV QGGVSANGFS VLTLPYGTLS
VNQSTGAYSF LPNPTALNSL AEGAEANFSF TLTVSDGQGG TQTAPLDITF TGANDVPVVS
AQTGTAVEAS GLNNNVAGSA ATGSLLTGPN AATDIDGDEI SVVGVRTGGQ SETGTEGVWT
DGTITLQGTY GTLTLNEDGS WSYAADDDNP TVDGLTGPTD TLEETFTYTV TDANGATASQ
ELTVTISGRN DALNVSSSIG TDISTGEDAD TQIDLTGLVF EDPDLGSEIY EFAVDAGQGT
LWTEGVDGLT VTGNGTGQLV LTGSATAISE WIAANDLTYR SPVEGSGADT ISLSYSEAGA
EVRTALESID VAVDMINDPA VVDVNGSVTT QGSAGVAEVA QVTFLSTGTA QVLNFDGVQM
QIAAGSTAAE IAEAFAAQEF PNWTVSLDGE GRVTLTATAT GARPDLTAAD FTNGSGAFSP
LVETTGGTDG SINFTARGPA IAILPTLELS DVDSAMMSGA KVSMTEGLFD NGFGTIYERL
SLSAEAREFA QQNGVGISIV TTAAAGSVIT FTGMASAEVY ETILRGVIYS NTNPNAVAGT
RPVKIEVTDS DGLASSLSSV NLTEGNTDIA VGQRIFINGV DSGQVVSMVR DATSFVASGP
LADLEPGAVL SFHDGSGQQT TAVSAGDGTA TMDVNVIWAP VIDMNGAGAG DIHRTTYIEQ
HAPIAIATAD ARIVDQEGLI RSLDVVLTNP LDNVEGSAPV EYLGISKAVL DVLAARGITI
GAHDGQFDAN GNLTGATSIT FAAANGASAT SFQIALRGVT YANMDDAPDT GTRIVTAQGT
DMDGNEGLIS HTEINPIAVG DAPVAIDSGV TGSEDAGHVF AAGDFGFADP LDGGANQLAS
ITINSLPATG TLLLGGVAVA VGTVVTLAQL QAGALTYQPV ANVNGEGVAS FDFLVTDNGS
LANGGQTTST APATMVIDLT PVNDAPVLPE GTSVTGTTIT EDQQLNAGEL VADLVGAMTD
VDTGVHSATN GTQQGIAVYG AGSEGFGGGT WQYRLAGGTD WIDVTLDPGE VLLLGADDRI
RFSPDGENAT EAQLSYYAWD GATGTAGNVV AGIAGPGNAS NRGGTSAFSS NGASATVEVT
AVNDAPSISM GEGNTFYARG EAVALFSDET LQLTDPDEGA AVSQIVITLD GETTVDNAFG
TTYETIFSAS GSTFVAQSGT ELTISGTGVA GDPLTISGAG SMEDYREALL SLRYENTNPN
AFAGDRAISV TVTDETGAGS APTDFILPVE WATVADLNGP SGEGRDHSIT YLEGSGSQAI
ATADAEMIDQ DGNTVEVVIT LEDAVNGSAE MLFVDPAVLP ALAALNIVVT GNGTHEIRLT
SEEGVDPTNF QLALRAVRYV NSSTAPTAAE RHVTVSSTDA DGNPGVPATT VIGMELGERR
TGCGSLDLLR GVRDPQPAVG RSAAARRHAG RCRRARAEPA GHRMAAGRCG DRFGQRHAGL
HAETGGCRPC HQRPHHLHRR
|
|---|
| |