| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_3524 |
|---|
| Symbol | |
|---|
| ID | 3721939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007494 |
|---|
| Strand | - |
|---|
| Start bp | 603069 |
|---|
| End bp | 604673 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640073189 |
|---|
| Product | ABC peptide transporter, periplasmic binding protein |
|---|
| Protein accession | YP_355027 |
|---|
| Protein GI | 77465524 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.413747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTACC CCACGGGCCC CATCGGCGGG CAGATCCTTG CGCAGGCCAT GAGCCTCGCC
CCCTCGCGAC GGGCCTTTCT GGGGGGCGCG GCCGCCGTGG CCGGCGCCTT CTGCCTGCCC
GCCTCGCTGC GAGCCGAGGA AGGGCCGAAG CGGGGCGGCC GGCTCCGCTA CGGCGTCAAC
GACGGCTCGC AGCAGGATTC GCTCGAGCCC GGCAGCTGGG CCACCGTCAT GTGCGGTGCG
GCCTTCAACG GCGCGCTCTG CAACAACCTC GTCGAGCTTC TGCCGGACGG GTCGCTGGCG
GGCGATCTCG CCGAAAGCTG GGAGGAGGCC GAGGGTGCCA CCCGCTGGAC CTTCACGCTC
CGCAAGGGTG TCCTGTTCCA CGACGGCCGC CCCTTCACCC CGGAGGATGC CCGGCAGTCG
CTGATGCATC ACATGGGCGA GGGCAGCACC TCGGGCGCGC TCGCCATCGT CAGCCAGATC
AAGGAGATCG CCGTCGAGGG CGAGGACCGG CTGATCGTGA CCCTCACGCA GGGCAATGCC
GACTTCCCCT ATCTGCTGTC GGATTATCAC CTCTCGATCT TCCCGGCGAA GGAGGGCGGC
GGCATCGACT GGGAGAGCGG CATCGGCACC GGCGCCTTCA AGCTCGACAG TTTCGAGCCG
GGCGTCGCGG TCCGACTGCT CCGCAATCCG AACTATCACA AGCCCGGCCT GCCGCATTTC
GACGAGGTCG AATTCATCGC GATCCCCGAC CGGTCCGCGC GGCTGAATGC GCTGCTGACC
GGCGAGGTCG ATGTGATCGA GGATGTCGAC ATCCGCAACG TCCCCCTGAT CGAGCGCAAT
CCCGATCTGG TGCTGCACCG CACGCCGAGC CTGCGGCACC TGACCTTCGA CATGAACTGC
CAAACGGCGC CCTTCGACAA TCCGGTCGTG CGCAAGGCCC TGAAGCTCAG CCTCGACCGC
GAGGATGTGA TCGCCAAGGT GTTCCTCGGC GAGGCCGAGA CGGGGAACGA CAACCCGGTG
GCGCGCATCA TGCCCTTCTG GGCCGAGACG CCGCCCGAGC ACCGCTACGA TCCCGAGGCC
GCGCGGGCGC TTCTGGCCGA GGCCGGGATC GAGGGGCTGA CGGTCGATCT CTCGGTGGCC
GAATCCGCCT TTCCCGGTGC GGTCGAAGCG GGGGTCCTTT TCCGCGAACA TGCCGCCAAG
GCCGGCATCA CGATCAACCT CGTGCAGGAG GCCGATGACG GCTACTGGGA CAATGTCTGG
CTGGTGAAGC CCTTCAACGC CGCCGACTGG TACGGGCGGG TCACGCTCGA CTGGCTGTTC
GCCACCTCCT ACACCTCCGA CGCGCCCTGG AACAACACGG GGTTCAAGAA CGCCCGCTTC
GACGAGCTGC ATGCGGCGGC GCGGTCGGAG ACCGATCCCG CCACGCGGGG CGAACAGTAT
GCCGAGATGC AGCAGATCCT GCACGACGAC GGCGGCGTGA TCACGGTGGC CTTCGTGTCC
TGGCTGCTCG CCATGTCGCG CGCCATCGGC CATGGTGAGA CCGGAGGCAT CCTGCCCGCC
GACAATCATC GCTGCGCCGA GCGGTGGTGG CGCACCGACG TCTGA
|
|---|
| Protein sequence | MRYPTGPIGG QILAQAMSLA PSRRAFLGGA AAVAGAFCLP ASLRAEEGPK RGGRLRYGVN
DGSQQDSLEP GSWATVMCGA AFNGALCNNL VELLPDGSLA GDLAESWEEA EGATRWTFTL
RKGVLFHDGR PFTPEDARQS LMHHMGEGST SGALAIVSQI KEIAVEGEDR LIVTLTQGNA
DFPYLLSDYH LSIFPAKEGG GIDWESGIGT GAFKLDSFEP GVAVRLLRNP NYHKPGLPHF
DEVEFIAIPD RSARLNALLT GEVDVIEDVD IRNVPLIERN PDLVLHRTPS LRHLTFDMNC
QTAPFDNPVV RKALKLSLDR EDVIAKVFLG EAETGNDNPV ARIMPFWAET PPEHRYDPEA
ARALLAEAGI EGLTVDLSVA ESAFPGAVEA GVLFREHAAK AGITINLVQE ADDGYWDNVW
LVKPFNAADW YGRVTLDWLF ATSYTSDAPW NNTGFKNARF DELHAAARSE TDPATRGEQY
AEMQQILHDD GGVITVAFVS WLLAMSRAIG HGETGGILPA DNHRCAERWW RTDV
|
|---|
| |