| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_3497 |
|---|
| Symbol | |
|---|
| ID | 3721913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007494 |
|---|
| Strand | + |
|---|
| Start bp | 572258 |
|---|
| End bp | 575173 |
|---|
| Gene Length | 2916 bp |
|---|
| Protein Length | 971 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640073163 |
|---|
| Product | caspase-1, p20 |
|---|
| Protein accession | YP_355001 |
|---|
| Protein GI | 77465498 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily
[COG4249] Uncharacterized protein containing caspase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGGG CAGAGCAGCG ATGGCCGGCG CGGGCGGCTC TCCTGCTCGT GCTGATCGCT
GCGGCCGGGC TGGCGCGGGG GCAGGAGACA CCCTCCGGCC CGCCGCCGCG GGTAGCGATG
GTGGTCGGCA ATTCCGCCTA TCAGAACGTG CCGGCCCTGC CCAATCCCGC GGGCGACGCG
GAACTCGTGG CGGAGAAGCT GTGGGAATCG GGCTTCGAGG TCATCGAGAC GGTGGACGCC
GACCGCGAGA CCATGCTCGC CGATCTCGCG ACCTTCCGCA GCCGCCTGCG CGAGGGCAGC
GAGGCGCTCT TCTTCTACGC GGGCCACGGG GTGCAGATCG GCGGGCGGAA CTACCTGCTG
CCGGTCTCGG TCGCCCCTTC CTCGGTCGAG GACCTGAAGG CGCAGGCCAT CGATGCGCAG
CTCTTTCTCG ATGTGATGGC GCAGTCGGGC GCGCGGCTGA CGCTCGTGCT GCTCGACGCC
TGCCGCAACA ATCCGTTCCT CGACATTCCC TCCGACGGCG CCGAGGCCAT CGCCACCCGC
GCCCTCTCGA TCGGCGCCTC GCGTGCGGCG GTGGAGCGGG GGCTCCGCGA TCTGGCGGCG
GCCAGCCGGG GCGGTCTGGC CGAGATGTCG GCCGGTCGCG GCGAGGCGCT CATCAGCTTT
GCCACCGCGC CCGGACAGGT CGCCTTCGAC GGGCGCGGAC GGCACAGCCC CTATACCAGC
GCGCTCGCCG GCAGCATCGA CGAGCCGGGG CTCGAACTCG TCGACCTCTT CCGCCGGGTG
CGGGGCGCGG TGCGCGAGGC GACCGGCGGG CAGCAGATCG CCTGGACGGC GAGCACGCTC
GAGAGCCGCT TCTATTTCAA GCCGCCAGCC GACGATCTGC GCTCTGCCAC CACCGGCATG
AGCACCGGGT CGGACACGCT CGGCGCGCTG CCGCCACGGC GGGTGGTGGA CCGCACCTTC
TGGCGCGCAA TCCGCGACAC GGACCGGCTC GACGCCTTCA CCGCCTATGT CCGCACCATG
CCGGACGGCG CCTTCGTCGC CGAGGCGAAG GAGAAGATCC GCAGCCTCGG CGGCGATCCC
GAGGCGATCC CGGTCTCGGA CCTGTCGCTG CCGGAGCGGC CGCGCGGCTT CGTGTTGGCC
GATCCTGCGG CGCAGGCCGA TCTCGCGGCG ACGCTCGACC GGGCGCCCGC ATCGGTGCCC
ATCGGAACGG GGGCGGCCCG CATCGGCGCC GCAGCCGGCA GGGCGGGCTG GGTTCATGTG
GCCGCAGCCC CGCGTCTCGG CGCGGTCTCG GCCGGCGGCA CCCGCCTCGA GGCGGGCTCG
GTGCGCTGGA TGGAGGCGGA CCAGCCGCTC GACTACCTCC CCGGCATCGG CTCGAACGGC
GGGCTCGACA GTCTCCGGGC CGAAGCCCTG CGCGAGGGCG GCACGACCGA ACCCCTTGAG
GCTGCGGTCG AAACCTATGT CGACGCCTGC GACATGCTCG CGGGCAACCC CTACGACAGC
CAGCGCGTCA CTGCCGGCAC GCGCCAGTTC ATCCTCGACC GCAACCACGA CGCCGCCATC
GCGGTCTGCG AGATCGCCGT CGCGCGCCAT CCGGAGGTGG TCCGGTTCTG GGCCGAACTC
GCGCGCAGCT ACCGCGCCGC GGGCCGCTAC GAGGAGGCGC TCCACTGGCA GCAGAAGGCG
GTCGACGCGG GCTATGCCTC GGCGATGGTC TATCTCGGGC AGATGTTCCT CGACGGCCAG
GCCGTGCCGC AGGACTTCGA CCGTGCGCGG GAGCTGTTCG AGGCGGCCGA TGCCCGCGGC
GAGACGGCGG CGCTGACGGC GCTGGCCTGG ATCCACCGGG CGGGGGTGGG TGTGCCGGAG
GATCCGGCCC GGGCGCTCGA CTTCTACCGG CAGGGGGCGG CGCGCGGCAA CGACTGGGCG
ATGACCAACA TCGGCGAGTT CTACCAGAAG GGCCTGAGCG TCGCCCGGGA TCCGGCCGAA
GCGGTGCGCT GGTATACGGC CGCGGCCAAG AGCGGCGAGC TGACCGCCCA GACGCGGCTC
GCGCGGATGT ATCAGACCGG CGACGGCATT GCGGTGGATG AGGCGCAGGC CCGCTTCTGG
TTCGAGACCG CCGCGGGCCG GGGCGTGCCG AATGCGCTGA CCCGTCTCGG CCTCATGTAT
GAGCAGGGTC AGGGGGTGGA CCGGGATCTC GAGGCAGCGG CGCGTCTTTA CGGCCGGGCG
GCTGCCGAGG GCGACGCCGA GGCCTGGCTG CGGCTGGGCC GGCTCGAAGC CTCGGACGCG
CCGCTGTTCG ACCGGCCCGA GCGCGCCCTG CCGCTGCTGG AGAAGGCGCT CGCGGCGCAG
GTGCCGGGCG CCGCGCGCGA GCTCGGGCGT CTCTACGAGA CGGGGCGCGG CGTGACGAAG
GATCTGGCCC GCGCCCGCGC GCTCTATGTG CAGGAGGCGG GCGCGAACCC CTGGGCCGCG
CGCGACGCCG GGCGCGCCTT CGCCTCGGAT GAGGGCGCGC CCGCCGATCC GGCGCAGGCG
GCCCGCTGGT ATCGGGCCGC GGCCGAGGGC GGGGTTCCGT GGGCGGCTCT CGATCTCGGG
CGGCTCTACG AGACCGGCCG CGGTGTGCCG CAGGACCGGA CCGAGGCGCT GGTCCTCTAT
GCCGCGGCCG CGCGTCCCGG AGGCGATGCC AGGGCGGCCG ACGCCGCCCG CCGCGCCGCC
GCCGGCTATT CGGCCGAGGA GACGATCCGG GCAGCGCAGC TGCTGCTTGG TCGCCTCGGC
GCCGAGGTGG GCGCGCCCGA CGGCCGGATC GGCCCCGCGA CGCGGGACGC GCTCGCCCGC
GTCTTTGCCG CGCAGGGGCG GGCCGCGCCC GGCACCCGCA TCGACTTCGA CCTGCTGGCC
GAGCTTTCGG CGATGGATGA GGAGAGACTG CCATGA
|
|---|
| Protein sequence | MPGAEQRWPA RAALLLVLIA AAGLARGQET PSGPPPRVAM VVGNSAYQNV PALPNPAGDA
ELVAEKLWES GFEVIETVDA DRETMLADLA TFRSRLREGS EALFFYAGHG VQIGGRNYLL
PVSVAPSSVE DLKAQAIDAQ LFLDVMAQSG ARLTLVLLDA CRNNPFLDIP SDGAEAIATR
ALSIGASRAA VERGLRDLAA ASRGGLAEMS AGRGEALISF ATAPGQVAFD GRGRHSPYTS
ALAGSIDEPG LELVDLFRRV RGAVREATGG QQIAWTASTL ESRFYFKPPA DDLRSATTGM
STGSDTLGAL PPRRVVDRTF WRAIRDTDRL DAFTAYVRTM PDGAFVAEAK EKIRSLGGDP
EAIPVSDLSL PERPRGFVLA DPAAQADLAA TLDRAPASVP IGTGAARIGA AAGRAGWVHV
AAAPRLGAVS AGGTRLEAGS VRWMEADQPL DYLPGIGSNG GLDSLRAEAL REGGTTEPLE
AAVETYVDAC DMLAGNPYDS QRVTAGTRQF ILDRNHDAAI AVCEIAVARH PEVVRFWAEL
ARSYRAAGRY EEALHWQQKA VDAGYASAMV YLGQMFLDGQ AVPQDFDRAR ELFEAADARG
ETAALTALAW IHRAGVGVPE DPARALDFYR QGAARGNDWA MTNIGEFYQK GLSVARDPAE
AVRWYTAAAK SGELTAQTRL ARMYQTGDGI AVDEAQARFW FETAAGRGVP NALTRLGLMY
EQGQGVDRDL EAAARLYGRA AAEGDAEAWL RLGRLEASDA PLFDRPERAL PLLEKALAAQ
VPGAARELGR LYETGRGVTK DLARARALYV QEAGANPWAA RDAGRAFASD EGAPADPAQA
ARWYRAAAEG GVPWAALDLG RLYETGRGVP QDRTEALVLY AAAARPGGDA RAADAARRAA
AGYSAEETIR AAQLLLGRLG AEVGAPDGRI GPATRDALAR VFAAQGRAAP GTRIDFDLLA
ELSAMDEERL P
|
|---|
| |