| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_2679 |
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| Symbol | |
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| ID | 3720370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides 2.4.1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007493 |
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| Strand | - |
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| Start bp | 1323185 |
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| End bp | 1325791 |
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| Gene Length | 2607 bp |
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| Protein Length | 868 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640070855 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_352735 |
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| Protein GI | 77463231 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCCA ACCCGCGACA GGATCTCGAC CGCTACCGCG CCAAGCGCGA CTTCGCGCGC
ACGCCCGAGC CGCAGGGCCG TTCCGAGGCG CCGCGCCCCG AGGCGGAGAG CCTGTCCTTC
GTCGTGCAGA AACATGCAGC CTCCCGTCTG CACTGGGATT TCCGGCTGGA GTGGAACGGT
GTCCTGCTGA GCTGGGCCGT GACGCGCGGC CCCTCGCCCG ATCCGTCCGC CCGCAGGCTT
GCGGTGCGAA CCGAGGATCA TCCGCTGGAT TATGCCGAGT TCGAGGGCAC GATCCCCAAG
GGCGAATATG GCGGCGGCAC GGTCATGCTC TGGGACCGGG GCACTTGGGA ACCGCAGGGC
GACTTTGCGG AGGGGCTGCG CACCGGTCAG CTCAAGATCC GCCTCGCGGG CGAGCGGATG
CGCGGCCGCT GGACGCTGGT GCGCATGAAA CCCAGGCCGC GCGAGAAGGC CGAGAACTGG
CTCCTCATCA AGGAGCACGA CACGCATGAA AGCGAGCAGA CCGAGGAGCT GGTCGAGCGG
CACATGACCT CGGTCGCAAC GGGGCGGACC ATGGAGCAGA TCGCCGCCGG CAAGGCGCCA
CCGCGGCGCA CGCGCCAGGC TGCCCTGCCC GCCTTCCGGC CGCTCCAGCT CGCGCGCCTC
GTTTCGGCGG CGCCCGAGGG CGAGGACTGG ATCCACGAGA CCAAGTTCGA CGGCTACCGC
TGCCTCGCGG CCCTCGCCGG AGGTCGGGCC CGCCTCTACA CCCGCTCCGG CCTCGACTGG
ACGGCCAAGT TCGGCGCCCT CGTCGAGGAT GTCGAGGCGC TTGAGGCCCA GGAGGCGCTG
ATCGACGGCG AGGTGATCGC GCCGGGCCGG GAGGGCGGCT CGTTCTCCGA GCTGCAGGCA
CGGCTGAAAT CGGGGGGCCA GCTCCTCTTC ATGACCTTCG ACCTGCTGCT CCTCGACGGC
GAGGACCTGA CCGGACAGCC GCTTCTCGCG CGGAAGGAGC GGCTCAAGAC GCTGATCGGC
AAGGGGCGCG GCGCGGTGCG CTTCTCGGGC CACATCCGCG GCCACGGCCC CGAGGTGCAC
GAGCGCATAT GCGCAGCGGG CCTTGAAGGG ATCGTCTCGA AGCGGGCCTC CGCGCCCTAT
GCGGGCAGCC GGAACGGCGA CTGGCTGAAG GTGAAATGCG CGCACCGGCA GGAATTCGTG
ATCTGCGGCT GGAACGCCTC GGACAAGCCG GGCCGTCCCT TCGCCTCGCT GGTGATGGGC
AGCTACGAAA AGAGCCGTCT GGTCTACCGC GGCAGTGTCG GCAGCGGCTT CGGCGCCCCC
CTGTTCCGCG AGTTGAAGCC GCTTCTGGCC GAACGGGCGC AAAGCGCCTG CCCCTTCGAC
CGCACGCCGG CCGAGGCCAA GGGGGCGCAC TGGCTGAAGC CCGAGCTGGT GGCCGAGGTG
AGCTTCACCG AACTGACGGC GGAGGGGCAC ATCCGGCACG GGGTCTTCGC CGGCCTGCGG
AGCGACAAGG ACGCGCGGGA GGTGCGGCTC GAGGAGCCCG CGCCCGAAAC GCCCGCGCCC
CGGAAGTCGG GCGTGCGGAA GAAGGGGACG AAGACGGCCC GGCCAGACGC CCCCTCACCC
GACGAGCCCG CCCCCGAGCC TGCCCGGAAA CCCCGGACGG CGCGCGGGGA GAAGAAGGAG
ACGACGATGG CCCGACCCGA CGACCTGCGC GTCGCAGGCA TCCGCATCAG CCACCCCGAC
CGGCGGATCT ACGACCGGCC CGCCGTCACG AAGCGCGAGG TGGCGGAGCA TGCCGAGGCA
CTGGCGCCGC GGATGCTGCG CTTCCTGAAG GATCGTCCCG TCTCGCTCCT GCGTTGCCCG
GAAGGGGCGG CGGCGGAGTG CTTCTTCCAG AAGCACCGCA CCCGCGGCAT GCCCGTCGCG
ATGAAGACGG TGCCCGTCGA GACGAAATCG GGGCCCGAGG ATTTCATCAC CCTGCCCGAT
GTCGCGGCTC TGGTCGGGGC CACGCAGATG GGGACACTCG AATTCCACAT CTGGGGCTCG
CGCAACCGCA GCCTTCAGCG ACCGGACCGG CTGGTGTTCG ATCTCGACCC CGACGAGGGT
CTCGACTTCG CCCATGTGCG GACCGCGGCG GCCGAGCTGC GCGGTCTGCT CACGGACCTC
GGCCTGCCCT CGGTGCCGAT GCTCTCCGGC GGCAAGGGGG TGCATGTGAT CGTGCCGCTG
AAGCCCAAGG CCGAATGGGA GAGCGTGAAG CTCTTCTCGC GGGCGCTCGC CACCCATCTG
GCTCAGGAGG CGCCCGACCG CTACACGGCC ACGATGGCCA AGGCCGGGCG CAAGGGCCGG
ATCTTCATCG ACTGGCTGCG GAACGACCGC GGCTCGACGG CGATCGCTCC CTACAGCCTG
CGCGCCCGCC CGGGCGCGCC GGTGGCGACG CCGGTCGACT GGGACGAACT CGCCTCGGCC
CGGTCGGGCG GCGACTGGAC GATCCGCTCC ATCCGCGACC GGCTCGACCG GCCCTGCCCG
CTGGCCGAGG CCTCCGCCCG GCCCGCGACA CTGGGTCGGA CCGTGATCGG GCGGCTCGAG
CGACTTGTGG CAGGAGGGAA ACCATGA
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| Protein sequence | MPANPRQDLD RYRAKRDFAR TPEPQGRSEA PRPEAESLSF VVQKHAASRL HWDFRLEWNG
VLLSWAVTRG PSPDPSARRL AVRTEDHPLD YAEFEGTIPK GEYGGGTVML WDRGTWEPQG
DFAEGLRTGQ LKIRLAGERM RGRWTLVRMK PRPREKAENW LLIKEHDTHE SEQTEELVER
HMTSVATGRT MEQIAAGKAP PRRTRQAALP AFRPLQLARL VSAAPEGEDW IHETKFDGYR
CLAALAGGRA RLYTRSGLDW TAKFGALVED VEALEAQEAL IDGEVIAPGR EGGSFSELQA
RLKSGGQLLF MTFDLLLLDG EDLTGQPLLA RKERLKTLIG KGRGAVRFSG HIRGHGPEVH
ERICAAGLEG IVSKRASAPY AGSRNGDWLK VKCAHRQEFV ICGWNASDKP GRPFASLVMG
SYEKSRLVYR GSVGSGFGAP LFRELKPLLA ERAQSACPFD RTPAEAKGAH WLKPELVAEV
SFTELTAEGH IRHGVFAGLR SDKDAREVRL EEPAPETPAP RKSGVRKKGT KTARPDAPSP
DEPAPEPARK PRTARGEKKE TTMARPDDLR VAGIRISHPD RRIYDRPAVT KREVAEHAEA
LAPRMLRFLK DRPVSLLRCP EGAAAECFFQ KHRTRGMPVA MKTVPVETKS GPEDFITLPD
VAALVGATQM GTLEFHIWGS RNRSLQRPDR LVFDLDPDEG LDFAHVRTAA AELRGLLTDL
GLPSVPMLSG GKGVHVIVPL KPKAEWESVK LFSRALATHL AQEAPDRYTA TMAKAGRKGR
IFIDWLRNDR GSTAIAPYSL RARPGAPVAT PVDWDELASA RSGGDWTIRS IRDRLDRPCP
LAEASARPAT LGRTVIGRLE RLVAGGKP
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