| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_2622 |
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| Symbol | ligA |
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| ID | 3720295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides 2.4.1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007493 |
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| Strand | + |
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| Start bp | 1260334 |
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| End bp | 1262448 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640070800 |
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| Product | DNA ligase |
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| Protein accession | YP_352680 |
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| Protein GI | 77463176 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.477478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGACG AGAGGCCGGT GGATCAACTG ACCGAGGCGG AAGCCGCGGC CGAGCTTGCA
CGGCTGGCAG AGGCGATCGA GGCTGCGAAT ACCGCCTACC ACACCCACGA CGCGCCGCAG
ATCAGCGACG CGGACTATGA CGCGCTCAAG GTGCGCAACC GGGCCATCGA GGAGCAGTTC
CCGGAGCTCC GCCGGAGCGA CAGCCCGAGC GACCGGGTGG GCGGGGCGCT GGCCGAAGGA
TTTGCGAAGG TTCGCCACGA TGTGCGGATG CTCTCGCTCG AGAATGCGTT CGACCTTGCC
GAGGTCGAGG ACTGGATCGA GCGGATCCGG CGTTATCTCG GCCATGTGGG CGACCTTCTG
TTCACGGCCG AACCGAAGAT CGACGGGCTC TCGCTGTCTC TCCGCTACGA GAAGGGGCGT
CTCGTGCAGG CGGCGACCCG CGGCGACGGC GAGACCGGCG AGAATGTGAC CGAGAACGCC
CGCACCATCG CGGACCTGCC CACCGAGCTC GACGGCGCGC CGGACCTGCT CGAGGTGCGC
GGCGAGGTCT ACATGAGCCA CGAGGATTTC GCGGCGCTGA ATGGCCGGCA GGAGGCCGCG
GGCCAGCGCC TCTTCGCCAA CCCGAGGAAT GCGGCCGCGG GCTCGCTCCG CCAGCTCGAT
CCGGCTGTCA CCGCCTCGCG CCCGCTGCGC TTCTTCGCCT ATGCCTGGGG CGCCCATTCC
GAGCCGCTGG CCGCCACGCA GCACGAGGCC ATCGCCCGTC TGGCCGCTTT GGGCTTTGCC
ACGAACCCGC TCACCCGCCT TTGCACGGGG CCCGAGGAGC TTCTGGCGCA ACATGCCCAG
ATCGAGCGGC AGCGTGCGGC GCTGGGCTAT GACATCGACG GTGTGGTCTA CAAGGTCGAC
GATCTGGCGC TGCAGCGGCG GCTGGGCTTT CGGGCCTCGA CGCCGCGCTG GGCCATCGCG
CACAAGTTCG CAGCCCAGCT CGCCTGGACC CAGCTCGAGG GGATCGACAT TCAGGTCGGC
CGCACCGGCG CCCTGTCGCC TGTGGCGCGC CTCAAGCCGG TGACGGTGGG CGGGGTCGTG
GTGGCCAATG CCACGCTCCA CAACGAGGAT TACATCGCCG GCCGCGATTC GAAGGGGCAG
GAGATCCGCG GCGGCAAGGA CATCCGCGTG GGCGACTGGG TGCAGGTCTA CCGTGCGGGC
GACGTGATCC CCAAGGTGGC CGATGTCGAT CTCGACCGCC GCCCCGAGGG GGCTGCGCCC
TACCGCTTTC CCGAGACCTG CCCCGAGTGC GGCTCCGAAG CCATCCGCGA GCCGGGCGAT
TCGGTGCGCC GCTGCACCGG CGGCCTGATC TGCCCGGCCC AGCAGGTCGA GCGGCTGAAG
CATTTCGTCT CGCGCGCGGC CTTCGATATC GAGGGGCTCG GCGCAAAGCA GGTCGAGGCG
CTCTGGCGCG ACGGCTGGAT CCGCCAGCCC GCCGACATCT TCGAGCTGCC GAACCGCTAC
CGCGACGGGA TGCAACGGCT CGAGAATCGG GAGGGCTGGG GGCGGAAATC GGCCGAGAAT
CTCTTCGCGG CCATCGAGGC GCGGCGGCGC ATCGCGCTCC ACCGGCTGAT CTTCGCGCTG
GGCATCCGCC ATGTGGGCGA AACCACGGCC ACGCTTCTGG CCACCCACTA CGGCTCCTGG
GCCGCTTTCG AGGCCGCGAT GACCCGCGCC GAGGTGGGCG CGGGGCCCGA GTGGCAGGAC
CTTCTCTCCA TCGACGGCGT GGGGGCGGTG CTTGCCACAT CGCTCGTCAC CGCCTTCCAT
CAGGAGGCCG AGCGGGCGGC GGTCGACGCG CTTGCGGCCC ATCTGACCGT CGAGGATGCC
GAGGTGCGCG CCCCGGTCGC GAGCCCCGTC GCGGGCAAGA TCGTGGTCTT CACCGGCACG
CTCGAGAAGA TGTCGCGCGC CGAGGCCAAG GCGCGGGCCG AGGCGCTGGG GGCGAAAGTG
TCCGGCTCGG TTTCGGCCAG GACCGATCTC GTGGTGGCGG GGCCGGGGGC GGGATCCAAG
GCCAAGCAGG CCGCGGCGCT CGGCATCGAG ACGATCGACG AGGACGGTTG GCTGCGCCTG
ATCGGGGACG CATGA
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| Protein sequence | MQDERPVDQL TEAEAAAELA RLAEAIEAAN TAYHTHDAPQ ISDADYDALK VRNRAIEEQF
PELRRSDSPS DRVGGALAEG FAKVRHDVRM LSLENAFDLA EVEDWIERIR RYLGHVGDLL
FTAEPKIDGL SLSLRYEKGR LVQAATRGDG ETGENVTENA RTIADLPTEL DGAPDLLEVR
GEVYMSHEDF AALNGRQEAA GQRLFANPRN AAAGSLRQLD PAVTASRPLR FFAYAWGAHS
EPLAATQHEA IARLAALGFA TNPLTRLCTG PEELLAQHAQ IERQRAALGY DIDGVVYKVD
DLALQRRLGF RASTPRWAIA HKFAAQLAWT QLEGIDIQVG RTGALSPVAR LKPVTVGGVV
VANATLHNED YIAGRDSKGQ EIRGGKDIRV GDWVQVYRAG DVIPKVADVD LDRRPEGAAP
YRFPETCPEC GSEAIREPGD SVRRCTGGLI CPAQQVERLK HFVSRAAFDI EGLGAKQVEA
LWRDGWIRQP ADIFELPNRY RDGMQRLENR EGWGRKSAEN LFAAIEARRR IALHRLIFAL
GIRHVGETTA TLLATHYGSW AAFEAAMTRA EVGAGPEWQD LLSIDGVGAV LATSLVTAFH
QEAERAAVDA LAAHLTVEDA EVRAPVASPV AGKIVVFTGT LEKMSRAEAK ARAEALGAKV
SGSVSARTDL VVAGPGAGSK AKQAAALGIE TIDEDGWLRL IGDA
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