| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_2445 |
|---|
| Symbol | |
|---|
| ID | 3720042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | + |
|---|
| Start bp | 1078538 |
|---|
| End bp | 1080742 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640070626 |
|---|
| Product | putative Alpha amylase |
|---|
| Protein accession | YP_352507 |
|---|
| Protein GI | 77463003 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAAAA TGCGCATGGC CCTTGCCGCG CCCTCCGCCG GAAGAGGGAA CCAAAGATTG
TGCGACCGGT TGAGTTCGCA CACTCGACCA AGATGGGGAT CAGGCGTGAC GGACAGGAAT
GGCGAGAGCG GCCGCATGCG GCCCGCCCGC GCATTGCGCG CTCCGAAAGG ACCGGACTCA
GAGGCCAACC GGCAGGGCGT GGCAGCAGCG ACAGGAGCGC AGGACAGGCG CGACGGGGGC
GAGGAGGCGC TGATGCGGCT GGCCGACGCC CGCGTCGCCA TCGAGGGCGT CAATCTGGAG
ATCGACGGCG GGCGCTTTGC GGCGAAGGTG GTGGCCGGTT GGGAGGTGGC GGTCGAGGCC
GACATCTTCT GCGACGGGCA TGACAGCATC GACGCGGCCG TGCTGCACCG TCAGCGGGGC
ACCGATGACT GGATCGAGGT CCGCATGGAG TTCCTCGTGA ACGACCGCTG GCAGGCGCAC
GTCACCTTCG CCGAGAACGC CTTCCACGAG CTGACCTTCC TCGCCTGGCG CGACCTCTAC
ACCACCTGGC GCAAGGAGGT GGCGAAGAAG CTGGCCGCTG GCCAGAAGAT CGATCTCGAA
CTCGAGGAGG GGCGCAGGCT CCTGCAATCG GTCGAGACCG CCGGAGCGGA GGATCGCGCC
CTCGTCGACC GCATCCTCGG CGAGGACGGG GCGGATCAGG AGGCGGGCGC CCGCTTCGCC
CGGATGAGCT CTCCCGAAGC GGTGGCGGCG ATGAAACGCT GTGCGCCGCG CACCAATCTC
ACCTGCTACA AGATCCTGCC GATCTTCGCC GACCGCGAGG CCGCGGCCTT TTCGGCCTGG
TACGAGATGA TGCCGCGGTC GCAGTCGGAC GATCCGGAGC GGCACGGCAC CTTCGACGAT
GTGATCCGCA AACTGCCCTA TGTGCGGGAT CTGGGCTTCG ATGTGCTCTA TTTCACGCCG
ATCCACCCGA TCGGGCGCGT GAACCGCAAG GGGCGCAACA ACAGTCTGAC GCCTGCGCCG
GACGATCCGG GCTCTCCTTA TGCCATCGGC AGCGAAGAGG GCGGGCACGA TGCGATCCAT
CCCGAACTCG GCGATTTCGA GAGCTTCGGC CGGCTGGTCG AGGCCGCCCA TGCCCATGGG
CTCGAGATCG CGCTCGATTT CGCGATCCAG TGCGCGCCGG ACCACCCCTG GATCCGCGAG
CATCCGGAAT GGTTCGACTG GCGGCCGGAC GGCACGATCA AGTTCGCCGA GAACCCTCCG
AAGAAATACG AGGACATCGT CAACGTCCAT TTCTACCGCG GCGCCCTGCC GGAACTGTGG
TATGCGCTCC GCGACGTGGT GCTGTTCTGG GTGGAAAAGG GCGTGAAGAT CTTCCGGGTG
GACAATCCCC ACACGAAGCC CTTCCCGTTC TGGGAGTGGA TGATCGGTGA GGTGCAGTCG
CAGCATCCCG ACGTGATCTT CCTCGCCGAG GCCTTCACGC GCCCCAAGGT GATGAAGCGT
CTGGGCAAGG TGGGCTACGG CCAGAGCTAT TCCTACTTCA CCTGGCGCAA TACCAAGGCC
GAGCTCATCG ACTATCTCAC CGAGCTCACC ACCGAAGAAT GCCGGCACTA CATGCGGCCG
AACTTCTTTG CCAATACGCC CGACATCAAT CCGGTCTATC TCCAGCATTC GGGGCGGGCG
GGGTTCCGGG TGCGGCTCGC GCTGGCCGCG ACGCTCGGGG GCAACTACGG GCTCTACAAC
GGCTATGAGA TCTGCGAGGC GACCCCGGTG CCGGGGAAGG AGGAGTATTT CAATTCCGAG
AAATACCAGC TCCGCGCCTG GGACTTCGAC CAGCCGGGCC ATATCCAGGA TGACATCCGG
CTGATGAACC ACATTCGCCG CACCCATCCT GCGATGCGCG ATTTCACCCG GCTGCGCTTC
TACGATGCGC ACAACGACTC CGTGCTGGCC TATGGCAAGA GCACCGAGGA CAAGCAGGAT
TTCCTGCTCT TCCACGTCAA CCTCGATCCG CACGCGGCCC AGACCTTCGA GTTCGAGGTC
CCGCTGTGGG AGTTCGGGCT GCCCGACGAT GCCTCGGTCG AGGTCGAGGA TCTGCTCAAC
GGAAATCGCT TCACCTGGCA CGGAAAGTGG CAGTGGCTTG AACTCGACCC GCAGACCCGC
CCCTATGCGG TCTGGCGGCT CTACGCGCCG GGAATGCCCA GATGA
|
|---|
| Protein sequence | MPKMRMALAA PSAGRGNQRL CDRLSSHTRP RWGSGVTDRN GESGRMRPAR ALRAPKGPDS
EANRQGVAAA TGAQDRRDGG EEALMRLADA RVAIEGVNLE IDGGRFAAKV VAGWEVAVEA
DIFCDGHDSI DAAVLHRQRG TDDWIEVRME FLVNDRWQAH VTFAENAFHE LTFLAWRDLY
TTWRKEVAKK LAAGQKIDLE LEEGRRLLQS VETAGAEDRA LVDRILGEDG ADQEAGARFA
RMSSPEAVAA MKRCAPRTNL TCYKILPIFA DREAAAFSAW YEMMPRSQSD DPERHGTFDD
VIRKLPYVRD LGFDVLYFTP IHPIGRVNRK GRNNSLTPAP DDPGSPYAIG SEEGGHDAIH
PELGDFESFG RLVEAAHAHG LEIALDFAIQ CAPDHPWIRE HPEWFDWRPD GTIKFAENPP
KKYEDIVNVH FYRGALPELW YALRDVVLFW VEKGVKIFRV DNPHTKPFPF WEWMIGEVQS
QHPDVIFLAE AFTRPKVMKR LGKVGYGQSY SYFTWRNTKA ELIDYLTELT TEECRHYMRP
NFFANTPDIN PVYLQHSGRA GFRVRLALAA TLGGNYGLYN GYEICEATPV PGKEEYFNSE
KYQLRAWDFD QPGHIQDDIR LMNHIRRTHP AMRDFTRLRF YDAHNDSVLA YGKSTEDKQD
FLLFHVNLDP HAAQTFEFEV PLWEFGLPDD ASVEVEDLLN GNRFTWHGKW QWLELDPQTR
PYAVWRLYAP GMPR
|
|---|
| |